Classes
class	HBP_FinalFullatomRefinementMoveGenerator
	A class to generate ParsedProtocols for the final full-atom refinement step. More...

class	HBP_HelixCoilMoveGenerator
	A class for a module to generate ParsedProtocols for the next move in a Monte Carlo trajectory, based on the current state of the pose. This version uses helix-coil transition theory to nucleate and extend helices. More...

class	HBP_MoveGenerator
	A base class for a module to generate ParsedProtocols for the next move in a Monte Carlo trajectory, based on the current state of the pose. More...

class	HBP_SigmoidalTemperatureScheduleGenerator
	A class to generate a temperature ramping scheme for a simulated annealing trajectory. This version ramps sigmoidally. More...

class	HBP_TemperatureScheduleGenerator
	A base class to generate a temperature ramping scheme for a simulated annealing trajectory. More...

class	HBPHelixParameters
	Helical parameters stored by the HBPHelix class. More...

class	HBPHelix
	An individual helix. This class stores start and end positions, plus helical parameters. More...

class	HBPHelixAssignments
	A class for storing the helix assignments for a pose. This can represent those proposed from an input file, or those at the current state of a trajectory. More...

class	HelicalBundlePredictApplicationOptions
	Options for the application. More...

class	HelicalBundlePredictApplication
	The meat-and-potatoes for the helical_bundle_predict application, used to predict structures of helical bundles made from canonical or noncanonical building-blocks. More...

Typedefs
typedef utility::pointer::shared_ptr< HBP_FinalFullatomRefinementMoveGenerator >	HBP_FinalFullatomRefinementMoveGeneratorOP

typedef utility::pointer::shared_ptr< HBP_FinalFullatomRefinementMoveGenerator const >	HBP_FinalFullatomRefinementMoveGeneratorCOP

typedef utility::pointer::shared_ptr< HBP_HelixCoilMoveGenerator >	HBP_HelixCoilMoveGeneratorOP

typedef utility::pointer::shared_ptr< HBP_HelixCoilMoveGenerator const >	HBP_HelixCoilMoveGeneratorCOP

typedef utility::pointer::shared_ptr< HBP_MoveGenerator >	HBP_MoveGeneratorOP

typedef utility::pointer::shared_ptr< HBP_MoveGenerator const >	HBP_MoveGeneratorCOP

typedef utility::pointer::shared_ptr< HBP_SigmoidalTemperatureScheduleGenerator >	HBP_SigmoidalTemperatureScheduleGeneratorOP

typedef utility::pointer::shared_ptr< HBP_SigmoidalTemperatureScheduleGenerator const >	HBP_SigmoidalTemperatureScheduleGeneratorCOP

typedef utility::pointer::shared_ptr< HBP_TemperatureScheduleGenerator >	HBP_TemperatureScheduleGeneratorOP

typedef utility::pointer::shared_ptr< HBP_TemperatureScheduleGenerator const >	HBP_TemperatureScheduleGeneratorCOP

typedef utility::pointer::shared_ptr< HBPHelixParameters >	HBPHelixParametersOP

typedef utility::pointer::shared_ptr< HBPHelixParameters const >	HBPHelixParametersCOP

typedef utility::pointer::shared_ptr< HBPHelix >	HBPHelixOP

typedef utility::pointer::shared_ptr< HBPHelix const >	HBPHelixCOP

typedef utility::pointer::shared_ptr< HBPHelixAssignments >	HBPHelixAssignmentsOP

typedef utility::pointer::shared_ptr< HBPHelixAssignments const >	HBPHelixAssignmentsCOP

typedef core::Size	HBPStartPosition

typedef core::Size	HBPEndPosition

typedef utility::pointer::shared_ptr< HelicalBundlePredictApplication >	HelicalBundlePredictApplicationOP

typedef utility::pointer::shared_ptr< HelicalBundlePredictApplication const >	HelicalBundlePredictApplicationCOP

typedef utility::pointer::shared_ptr< HelicalBundlePredictApplicationOptions >	HelicalBundlePredictApplicationOptionsOP

typedef utility::pointer::shared_ptr< HelicalBundlePredictApplicationOptions const >	HelicalBundlePredictApplicationOptionsCOP