chainbreak_util.cc File Reference

Utility functions for scoring chainbreaks. More...

#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/VariantType.hh>
#include <boost/unordered/unordered_set.hpp>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <basic/Tracer.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::scoring
	core::scoring::methods

Functions
static basic::Tracer	TR ("core.scoring.methods.chainbreak_util")
bool	core::scoring::methods::is_lower_cutpoint (core::Size residue, core::pose::Pose const &pose)
bool	core::scoring::methods::is_upper_cutpoint (core::Size residue, core::pose::Pose const &pose)
void	core::scoring::methods::find_cutpoint_variants (core::pose::Pose const &pose, core::kinematics::FoldTree const &, utility::vector1< int > &cutpoints)
bool	core::scoring::methods::lower_upper_connected_across_cutpoint (core::conformation::Residue const &lower_rsd, core::conformation::Residue const &upper_rsd)
	Helper function for looking at residue connections to get lower/upper partners. More...
Size	core::scoring::methods::get_upper_cutpoint_partner_for_lower (core::pose::Pose const &pose, core::Size const lower_res)
	Instead of assuming cutpoint partner is simply cutpoint+1, find which residue connects via lower/upper. More...
Size	core::scoring::methods::get_lower_cutpoint_partner_for_upper (core::pose::Pose const &pose, core::Size const upper_res)
	Instead of assuming cutpoint partner is simply res-1, find which residue connects via lower/upper. More...

Detailed Description

Utility functions for scoring chainbreaks.

Author

James Thompson

Function Documentation

TR()

static basic::Tracer TR ( "core.scoring.methods.chainbreak_util"  )

static