SegmentPairing.cc File Reference

Handles user-specified pairing between/among segments. More...

#include <protocols/denovo_design/components/SegmentPairing.hh>
#include <protocols/denovo_design/architects/StrandArchitect.hh>
#include <protocols/denovo_design/components/Segment.hh>
#include <protocols/denovo_design/components/StructureData.hh>
#include <protocols/fldsgn/topology/SS_Info2.hh>
#include <core/select/residue_selector/ResidueVector.hh>
#include <basic/Tracer.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <utility/string_util.hh>
#include <utility/stream_util.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::denovo_design
	protocols::denovo_design::components

Functions
static basic::Tracer	TR ("protocols.denovo_design.components.SegmentPairing")
std::ostream &	protocols::denovo_design::components::operator<< (std::ostream &os, SegmentPairing const &pairing)
core::select::residue_selector::ResidueVector	protocols::denovo_design::components::get_strand_residues (StrandOrientation const &orient, core::Size const start, core::Size const stop, core::select::residue_selector::ResidueVector const &bulges)
core::select::residue_selector::ResidueVector	protocols::denovo_design::components::get_bulges (core::Size const start, core::Size const stop, std::string const &abego)
void	protocols::denovo_design::components::add_paired_residues (StructureData const &sd, StrandPairing const &p, protocols::fldsgn::topology::SS_Info2 const &ss_info, ResiduePairs &pairs)
core::Size	protocols::denovo_design::components::count_bulges (protocols::fldsgn::topology::Strand const &strand, std::string const &abego)

Detailed Description

Handles user-specified pairing between/among segments.

Author

Tom Linsky (tlins.nosp@m.ky@u.nosp@m.w.edu)

Function Documentation

TR()

static basic::Tracer TR ( "protocols.denovo_design.components.SegmentPairing"  )

static