util.cc File Reference

Utility functions for JD3. More...

#include <protocols/jd3/util.hh>
#include <core/select/residue_selector/util.hh>
#include <protocols/jd3/InnerLarvalJob.hh>
#include <protocols/parser/ResidueSelectorLoader.hh>
#include <protocols/parser/ScoreFunctionLoader.hh>
#include <utility/options/OptionCollection.hh>
#include <utility/options/keys/OptionKeyList.fwd.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <utility/tag/Tag.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/options/util.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/DataMap.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::jd3

Functions
static basic::Tracer	TR ("protocols.jd3.util")
void	protocols::jd3::append_residue_selector_subelements (utility::tag::XMLSchemaDefinition &job_definition_xsd, utility::tag::XMLSchemaComplexTypeGenerator &job_ct_gen)
	Append Residue Selector elements for your JD file. More...
void	protocols::jd3::append_single_scorefxn_subelement (utility::tag::XMLSchemaDefinition &job_definition_xsd, utility::tag::XMLSchemaComplexTypeGenerator &job_ct_gen)
	Append the ability to have a SINGLE ScoreFunction set. More...
void	protocols::jd3::add_residue_selectors_to_datamap (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap)
	Add all residue selectors to a given datamap from a tag. More...
core::select::residue_selector::ResidueSelectorCOP	protocols::jd3::parse_single_residue_selector (utility::tag::TagCOP tag, std::string const &selector_name)
	Return a single residue selector from tag. More...
core::Size	protocols::jd3::nstruct_for_job (utility::tag::TagCOP job_tag)
	Get the nstruct from the job_tag, or fallback to the cmd-line. More...
utility::options::OptionCollectionOP	protocols::jd3::options_from_tag (utility::options::OptionKeyList const &option_keys, utility::tag::TagCOP job_options_tags, utility::tag::TagCOP common_block_tags)
	Create a local options collection from a tag. More...
utility::options::OptionCollectionOP	protocols::jd3::options_for_job (utility::options::OptionKeyList const &option_keys, InnerLarvalJob const &inner_job, utility::tag::TagCOP common_block_tags)
	Create a local options collection from an InnerLarvalJob. More...
void	protocols::jd3::print_job_template ()
	Prints the job template to a Tracer. More...
utility::options::OptionTypes	protocols::jd3::option_type_from_key (utility::options::OptionKey const &key)
	Get the OptionType from a key. More...
utility::tag::XMLSchemaType	protocols::jd3::value_attribute_type_for_option (utility::options::OptionTypes const &key)
	Get the XMLSchemaType for an option key. Used during SJQ's xsd parsing. More...

Detailed Description

Utility functions for JD3.

Author

Andrew Leaver-Fay (aleav.nosp@m.erfa.nosp@m.y@gma.nosp@m.il.c.nosp@m.om)

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Function Documentation

TR()

static basic::Tracer TR ( "protocols.jd3.util"  )

static