KinematicPerturber.cc File Reference

implementations for KinematicPerturbers used by the kinematic mover More...

#include <protocols/loops/loop_closure/kinematic_closure/KinematicPerturber.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicMover.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/ppo_torsion_bin.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/Ramachandran.hh>
#include <core/scoring/Ramachandran2B.hh>
#include <core/scoring/ScoringManager.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <numeric/random/random.hh>
#include <numeric/random/random_permutation.hh>
#include <numeric/conversions.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::loops
	protocols::loops::loop_closure
	protocols::loops::loop_closure::kinematic_closure

Functions
static basic::Tracer	protocols::loops::loop_closure::kinematic_closure::TR ("protocols.loops.loop_closure.kinematic_closure.KinematicPerturber")

Detailed Description

implementations for KinematicPerturbers used by the kinematic mover

Author

Florian Richter, flori.nosp@m.c@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu, march 2009

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu, 2011 – options of cis/trans prolines, and turn off ca bond geometry variation.

Amelie Stein, ameli.nosp@m.e.st.nosp@m.ein@u.nosp@m.csf..nosp@m.edu, Oct 2012 – vicinity sampling refactoring & new perturbers