#include <vector>
#include <fstream>
#include <iostream>
#include <iomanip>
#include <math.h>
#include <assert.h>
#include <time.h>
#include <numeric/random/random.hh>
#include <protocols/cluster/calibur/rmsd.hh>
#include <protocols/cluster/calibur/Clustering.hh>
#include <protocols/cluster/calibur/AdjacentList.hh>
#include <protocols/cluster/calibur/InitCluster.hh>
#include <core/types.hh>
#include <protocols/cluster/calibur/PreloadedPDB.hh>
#include <protocols/cluster/calibur/SimPDB.hh>
#include <string.h>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.

	protocols::cluster

	protocols::cluster::calibur

Macros
#define	_MATRIX_MODE_LIMIT_ 13000

#define	_SHOW_PERCENTAGE_COMPLETE_

#define	_OVER_RMSD_ 9999999

#define	REFERENCE_SIZE 6

#define	RANDOM_DECOY_SIZE_FOR_FILTERING 101

#define	RANDOM_DECOY_SIZE_FOR_THRESHOLD 101

#define	NUM_TRIALS_FOR_THRESHOLD 16

#define	DEFAULT_PERCENTILE_FOR_THRESHOLD 10

#define	MAX_PERCENTILE_FOR_THRESHOLD 50

#define	MIN_PERCENTILE_FOR_THRESHOLD 3

Functions
static int	protocols::cluster::calibur::__cmp (const void a, const void b)

Macro Definition Documentation

◆ _MATRIX_MODE_LIMIT_

#define _MATRIX_MODE_LIMIT_ 13000

◆ _OVER_RMSD_

#define _OVER_RMSD_ 9999999

◆ _SHOW_PERCENTAGE_COMPLETE_

#define _SHOW_PERCENTAGE_COMPLETE_

◆ DEFAULT_PERCENTILE_FOR_THRESHOLD

#define DEFAULT_PERCENTILE_FOR_THRESHOLD 10

◆ MAX_PERCENTILE_FOR_THRESHOLD

#define MAX_PERCENTILE_FOR_THRESHOLD 50

◆ MIN_PERCENTILE_FOR_THRESHOLD

#define MIN_PERCENTILE_FOR_THRESHOLD 3

◆ NUM_TRIALS_FOR_THRESHOLD

#define NUM_TRIALS_FOR_THRESHOLD 16

◆ RANDOM_DECOY_SIZE_FOR_FILTERING

#define RANDOM_DECOY_SIZE_FOR_FILTERING 101

◆ RANDOM_DECOY_SIZE_FOR_THRESHOLD

#define RANDOM_DECOY_SIZE_FOR_THRESHOLD 101

◆ REFERENCE_SIZE

#define REFERENCE_SIZE 6

Namespaces

Macros

Functions