Clustering.cc File Reference

#include <vector>
#include <fstream>
#include <iostream>
#include <iomanip>
#include <math.h>
#include <assert.h>
#include <time.h>
#include <numeric/random/random.hh>
#include <protocols/cluster/calibur/rmsd.hh>
#include <protocols/cluster/calibur/Clustering.hh>
#include <protocols/cluster/calibur/AdjacentList.hh>
#include <protocols/cluster/calibur/InitCluster.hh>
#include <core/types.hh>
#include <protocols/cluster/calibur/PreloadedPDB.hh>
#include <protocols/cluster/calibur/SimPDB.hh>
#include <string.h>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::cluster
	protocols::cluster::calibur

Macros
#define	_MATRIX_MODE_LIMIT_   13000
#define	_SHOW_PERCENTAGE_COMPLETE_
#define	_OVER_RMSD_   9999999
#define	REFERENCE_SIZE   6
#define	RANDOM_DECOY_SIZE_FOR_FILTERING   101
#define	RANDOM_DECOY_SIZE_FOR_THRESHOLD   101
#define	NUM_TRIALS_FOR_THRESHOLD   16
#define	DEFAULT_PERCENTILE_FOR_THRESHOLD   10
#define	MAX_PERCENTILE_FOR_THRESHOLD   50
#define	MIN_PERCENTILE_FOR_THRESHOLD   3

Functions
static int	protocols::cluster::calibur::__cmp (const void *a, const void *b)

Macro Definition Documentation

_MATRIX_MODE_LIMIT_

#define _MATRIX_MODE_LIMIT_   13000

_OVER_RMSD_

#define _OVER_RMSD_   9999999

_SHOW_PERCENTAGE_COMPLETE_

#define _SHOW_PERCENTAGE_COMPLETE_

DEFAULT_PERCENTILE_FOR_THRESHOLD

#define DEFAULT_PERCENTILE_FOR_THRESHOLD   10

MAX_PERCENTILE_FOR_THRESHOLD

#define MAX_PERCENTILE_FOR_THRESHOLD   50

MIN_PERCENTILE_FOR_THRESHOLD

#define MIN_PERCENTILE_FOR_THRESHOLD   3

NUM_TRIALS_FOR_THRESHOLD

#define NUM_TRIALS_FOR_THRESHOLD   16

RANDOM_DECOY_SIZE_FOR_FILTERING

#define RANDOM_DECOY_SIZE_FOR_FILTERING   101

RANDOM_DECOY_SIZE_FOR_THRESHOLD

#define RANDOM_DECOY_SIZE_FOR_THRESHOLD   101

REFERENCE_SIZE

#define REFERENCE_SIZE   6