StepWiseMinimizer.cc File Reference

#include <protocols/stepwise/modeler/StepWiseMinimizer.hh>
#include <protocols/stepwise/modeler/align/StepWiseClusterer.hh>
#include <protocols/stepwise/modeler/output_util.hh>
#include <protocols/stepwise/modeler/packer/util.hh>
#include <protocols/stepwise/modeler/protein/loop_close/StepWiseProteinCCD_Closer.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/stepwise/modeler/movemap/util.hh>
#include <protocols/stepwise/modeler/options/StepWiseModelerOptions.hh>
#include <protocols/stepwise/modeler/working_parameters/StepWiseWorkingParameters.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/scoring_util.hh>
#include <protocols/stepwise/modeler/protein/util.hh>
#include <protocols/stepwise/modeler/polar_hydrogens/util.hh>
#include <protocols/stepwise/modeler/rna/StepWiseRNA_OutputData.hh>
#include <protocols/stepwise/legacy/modeler/protein/util.hh>
#include <protocols/stepwise/monte_carlo/util.hh>
#include <protocols/rna/movers/RNA_LoopCloser.hh>
#include <protocols/magnesium/util.hh>
#include <protocols/recces/scratch/ThermalMinimizer.hh>
#include <protocols/simple_moves/ConstrainToIdealMover.hh>
#include <core/id/AtomID.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/pose/rna/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/scoring/Energies.hh>
#include <ObjexxFCL/format.hh>
#include <utility>
#include <utility/tools/make_vector1.hh>
#include <basic/Tracer.hh>
#include <utility/file/file_sys_util.hh>
#include <fstream>
#include <utility/pointer/memory.hh>
#include <core/pose/toolbox/AtomLevelDomainMap.hh>
#include <numeric/random/random.fwd.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::modeler

Functions
static basic::Tracer	TR ("protocols.stepwise.modeler.StepWiseMinimizer")
Real	protocols::stepwise::modeler::add_these (core::Size const final_idx, utility::vector1< Real > const &factors)
void	protocols::stepwise::modeler::freeze_waters (core::pose::Pose const &pose, core::kinematics::MoveMap &mm)

Detailed Description

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Function Documentation

TR()

static basic::Tracer TR ( "protocols.stepwise.modeler.StepWiseMinimizer"  )

static