Primitives.cc File Reference

Definition of primitive functions and classes used by the constel program. More...

#include <protocols/constel/Primitives.hh>
#include <protocols/constel/SingResCnlCrea.hh>
#include <protocols/constel/MasterFilter.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/conformation/Residue.hh>
#include <core/id/AtomID.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/scoring/hbonds/HBondDatabase.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <utility/graph/Graph.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/TenANeighborGraph.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/chemical/AA.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/io/pose_to_sfr/PoseToStructFileRepConverter.hh>
#include <numeric/xyzVector.hh>
#include <basic/Tracer.hh>
#include <utility/io/ozstream.hh>
#include <utility/vector1.hh>
#include <utility/pointer/memory.hh>
#include <iomanip>
#include <sstream>
#include <string>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::constel

Functions
static basic::Tracer	TR ("protocols.constel.Primitives")
void	protocols::constel::pair_constel_set_idx2 (core::Size const i, core::Size const j, Pose const &pose_init)
	Outputs all pair-constellations between a given pair of residues. More...
std::string	protocols::constel::create_constel_records_from_sfr (Pose const &ps, utility::vector1< core::Size > const &residues_to_print)
	concatenates into a string all the PDB ATOM records of a constellation More...
void	protocols::constel::out_pair_constel (ResMut const &mut1, ResMut const &mut2, Pose &ps)
	Outputs to file a constellation obtained from mutating a pair of residues. More...
void	protocols::constel::triple_constel_set_idx3 (core::Size const i, core::Size const j, core::Size const k, Pose const &pose_init)
	Outputs all triple-constellations among a given triple of residues. More...
void	protocols::constel::out_triple_constel (ResMut const &mut1, ResMut const &mut2, ResMut const &mut3, Pose &ps)
	Outputs to file a constellation obtained from mutating a triple of residues. More...

Detailed Description

Definition of primitive functions and classes used by the constel program.

Author

jk

Andrea Bazzoli

Function Documentation

TR()

static basic::Tracer TR ( "protocols.constel.Primitives"  )

static