VallData.cc File Reference

#include <protocols/frags/VallData.hh>
#include <protocols/frags/TorsionFragment.hh>
#include <protocols/frags/heap.hh>
#include <basic/basic.hh>
#include <basic/options/option.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/FArray1A.hh>
#include <utility/io/izstream.hh>
#include <numeric/random/random.fwd.hh>
#include <utility/exit.hh>
#include <basic/Tracer.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <ObjexxFCL/FArray1D.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::frags

Functions
static basic::Tracer	TR ("protocols.frags.VallData")
Real	protocols::frags::torsion_dev_score (Real const frag_angle, Real const target_angle, Real const min_dev, Real const max_dev)
void	protocols::frags::get_frags (core::Size const nfrags, std::string const &target_seq, std::string const &target_ss, core::Real const seq_weight, core::Real const ss_weight, bool const exclude_gly, bool const exclude_pro, bool const exclude_cis_peptides, utility::vector1< core::Size > const &homs_to_exclude, SingleResidueTorsionFragmentLibrary &library, core::Real const bb_weight=0.0, std::string const &target_bb=std::string())
	handles loading the vall if necessary More...
void	protocols::frags::get_frags (core::Size const nfrags, std::string const &target_seq, utility::vector1< std::map< char, core::Real > > const &target_ss, core::Real const seq_weight, core::Real const ss_weight, bool const exclude_gly, bool const exclude_pro, bool const exclude_cis_peptides, utility::vector1< core::Size > const &homs_to_exclude, SingleResidueTorsionFragmentLibrary &library, core::Real const bb_weight=0.0, std::string const &target_bb=std::string())
	handles loading the vall if necessary More...
void	protocols::frags::get_cheating_frags (core::Size const nfrags, std::string const &target_seq, std::string const &target_ss, utility::vector1< Real > const &target_phi, utility::vector1< Real > const &target_psi, utility::vector1< Real > const &target_omega, Real const seq_weight, Real const ss_weight, Real const torsion_weight, Real const min_torsion_dev, Real const max_torsion_dev, utility::vector1< core::Size > const &homs_to_exclude, SingleResidueTorsionFragmentLibrary &library)
void	protocols::frags::dump_vall_fasta (std::string const &fasta_filename)

Function Documentation

TR()

static basic::Tracer TR ( "protocols.frags.VallData"  )

static