Residue energy breakdown: Outputs residue-by-residue score information for a given input structure.
Density map scoring: Scores how well a structure agrees with experimental electron density data.
DDG monomer: Application to predict changes in stability for monomeric proteins caused by a point mutation.
Cartesian DDG: DDG calculation using Cartesian space sampling.
Interface analyzer: Calculates binding energies, buried surface areas, and other metrics for interfaces between two or more chains in a PDB.
interface_energy: energy at the interface between two sets of residues.
PeptiDerive: For a given interface, finds the linear stretch that contributes the most binding energy.
Pocket measure: This application takes in a PDB file and specified target residue/residue pair and, generates a (localized) PocketGrid, and outputs the total "deep volume" of all target pockets and the largest pocket.
Theta ligand: Given PDB files for a protein and ligand, outputs the fraction of the ligand that is exposed to solvent in the bound complex.
RosettaHoles: Rapid assessment of protein core packing for structure prediction, design, and validation.