- d -

• d0_ : core::scoring::TMscore
• d0_search_ : core::scoring::TMscore
• d1_ : core::scoring::FACTSRsdTypeInfo
• d2_ : core::scoring::FACTSRsdTypeInfo
• D2_ : core::scoring::func::GaussianChainDoubleFunc , core::scoring::func::GaussianChainQuadrupleFunc , core::scoring::func::GaussianChainTripleFunc
• d2_low_ : core::scoring::methods::LK_BallEnergy
• D3_ : core::scoring::func::GaussianChainQuadrupleFunc , core::scoring::func::GaussianChainTripleFunc
• D4_ : core::scoring::func::GaussianChainQuadrupleFunc
• d_ : core::chemical::AddConnect , core::chemical::Adduct , core::chemical::AtomICoor , core::chemical::SetICoor , core::kinematics::tree::BondedAtom
• D_ : core::scoring::ResidualDipolarCoupling
• d_location : core::scoring::disulfides::FullatomDisulfideParams13
• d_max : core::scoring::electron_density::ElectronDensity
• d_mean : core::scoring::sc::_RESULTS
• d_median : core::scoring::sc::_RESULTS
• d_min : core::scoring::electron_density::ElectronDensity
• d_scale : core::scoring::disulfides::FullatomDisulfideParams13
• d_shape : core::scoring::disulfides::FullatomDisulfideParams13
• dada : core::scoring::packstat::Circle
• data_ : core::fragment::FragData , core::graph::UEEdge< V, E > , core::graph::UEVertex< V, E > , core::pack::dunbrack::cenrot::CentroidRotamerSampleData , core::pack::rotamer_set::WaterPackingInfo , core::scoring::func::CircularGeneral1D_Func , core::scoring::methods::D2H_SA_Energy
• data_annotations_ : core::io::rna::RDAT
• data_cache_ : core::conformation::Residue , core::conformation::RotamerSetBase , core::pose::Pose , core::scoring::Energies , core::scoring::ResPairMinimizationData , core::scoring::ResSingleMinimizationData
• data_in_fft : core::scoring::fiber_diffraction::Hankel
• data_line : core::scoring::rna::chemical_shift::ChemicalShiftData
• database_ : core::scoring::hbonds::HBondEnergy
• database_directory_ : core::chemical::ResidueTypeSet
• db_ : core::scoring::methods::CartesianBondedEnergy
• dB_dBdnmtr_ : core::scoring::FACTSResidueInfo
• dB_dBnmtr_ : core::scoring::FACTSResidueInfo
• db_disulfides_ : core::scoring::disulfides::DisulfideMatchingDatabase
• db_init_ : core::scoring::disulfides::DisulfideMatchingDatabase
• dbg : core::scoring::APBSConfig
• dBR_ : core::pack::interaction_graph::FASTERInteractionGraph
• dBR_dG_ : core::scoring::FACTSResidueInfo
• dbx : core::scoring::APBSResult
• dby : core::scoring::APBSResult
• dbz : core::scoring::APBSResult
• dc_score_ : core::scoring::methods::DipolarCouplingEnergy
• dCCdxs_aacen : core::scoring::electron_density::ElectronDensity
• dCCdxs_cen : core::scoring::electron_density::ElectronDensity
• dCCdxs_pat : core::scoring::electron_density::ElectronDensity
• dCCdxs_res : core::scoring::electron_density::ElectronDensity
• DCerr_ : core::scoring::DC
• dchi2_d : core::scoring::fiber_diffraction::FiberDiffractionEnergy , core::scoring::fiber_diffraction::FiberDiffractionEnergyDens
• dchi2_d_cross_R : core::scoring::fiber_diffraction::FiberDiffractionEnergy , core::scoring::fiber_diffraction::FiberDiffractionEnergyDens
• dchi2_dca : core::scoring::saxs::FastSAXSEnergy
• dchi2_dsc : core::scoring::saxs::FastSAXSEnergy
• dchidevpen_dbb_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dchidevpen_dchi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dchimean_dbb_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dchimean_domg_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dchisd_dbb_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dchisd_domg_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dcs_kappa1 : core::scoring::disulfides::FullatomDisulfideParams13
• dcs_kappa2 : core::scoring::disulfides::FullatomDisulfideParams13
• dcs_kappa3 : core::scoring::disulfides::FullatomDisulfideParams13
• dcs_logA1 : core::scoring::disulfides::FullatomDisulfideParams13
• dcs_logA2 : core::scoring::disulfides::FullatomDisulfideParams13
• dcs_logA3 : core::scoring::disulfides::FullatomDisulfideParams13
• dcs_mu1 : core::scoring::disulfides::FullatomDisulfideParams13
• dcs_mu2 : core::scoring::disulfides::FullatomDisulfideParams13
• dcs_mu3 : core::scoring::disulfides::FullatomDisulfideParams13
• DCval_ : core::scoring::DC
• DCval_computed_ : core::scoring::DC
• DDP_lookup_table_ : core::scoring::ScoringManager
• dE_dbb_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dE_dbb_dev_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dE_dbb_dev_perchi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dE_dbb_rot_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dE_dbb_semi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dE_dchi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dE_dchi_dev_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dE_dchi_semi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dec15_score : core::scoring::packing::HolesResult
• decompose_bb_hb_into_pair_energies_ : core::scoring::hbonds::HBondOptions
• decoy_params_ : core::scoring::packing::HolesEnergy
• decoy_score : core::scoring::packing::HolesResult
• decoy_tag_ : core::io::raw_data::RawStruct , core::io::silent::SilentStruct
• dEfac_ : core::scoring::etable::coulomb::Coulomb
• DEFAULT_APBS_PATH : core::scoring::PoissonBoltzmannPotential
• default_commands_ : core::pack::task::ResfileContents
• default_value_ : core::id::AtomID_Map< T > , core::id::NamedAtomID_Map< T >
• default_weight_ : core::pack::task::IGEdgeReweighter
• defined_adducts_ : core::chemical::ResidueType
• degeneracy : core::chemical::RingConformer
• degenerate_conformers_ : core::chemical::RingConformerSet
• deleted_ : core::graph::UEEdge< V, E >
• delta2max : core::pose::rna::RNA_SuiteName
• delta2min : core::pose::rna::RNA_SuiteName
• delta3max : core::pose::rna::RNA_SuiteName
• delta3min : core::pose::rna::RNA_SuiteName
• delta_atom_names_ : core::scoring::dna::DNATorsionPotential
• delta_components_ : core::scoring::dna::DNATorsionPotential
• delta_cutoff : core::pose::rna::RNA_SuiteName
• delta_cutoff_ : core::chemical::rna::RNA_FittedTorsionInfo , core::pose::rna::RNA_IdealCoord
• DELTA_CUTOFF_ : core::scoring::dna::DNATorsionPotential
• delta_energies_unweighted_ : core::pose::metrics::simple_calculators::InterfaceDeltaEnergeticsCalculator
• delta_fade_ : core::scoring::rna::RNA_TorsionPotential
• delta_north_potential_ : core::scoring::rna::RNA_TorsionPotential
• delta_sasa_ : core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator
• delta_south_potential_ : core::scoring::rna::RNA_TorsionPotential
• deltaE_for_substitution_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > , core::pack::interaction_graph::SurfaceNode< V, E, G >
• deltaE_threshold_for_avoiding_hpatch_calcs_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• deltaE_threshold_for_avoiding_surface_calcs_ : core::pack::interaction_graph::SurfaceInteractionGraph< V, E, G >
• dens_max : core::scoring::electron_density::ElectronDensity
• dens_mean : core::scoring::electron_density::ElectronDensity
• dens_min : core::scoring::electron_density::ElectronDensity
• dens_stdev : core::scoring::electron_density::ElectronDensity
• density : core::scoring::electron_density::ElectronDensity , core::scoring::electron_density_atomwise::ElectronDensityAtomwise , core::scoring::sc::Atom , core::scoring::sc::MolecularSurfaceCalculator
• DensScoreInMinimizer : core::scoring::electron_density::ElectronDensity
• dentropy_dbb_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dep_day_ : core::io::pdb::HeaderInformation
• dep_month_ : core::io::pdb::HeaderInformation
• dep_year_ : core::io::pdb::HeaderInformation
• dependent_ : core::optimization::DOF_Node
• dependent_dof_nodes_ : core::optimization::symmetry::SymMinimizerMap
• depth_ : core::optimization::DOF_Node , core::scoring::MembraneEmbed , core::scoring::MembraneTopology
• deriv_ : core::scoring::rna::RNA_SuitePotential
• deriv_check_ : core::optimization::AtomTreeMultifunc , core::optimization::CartesianMultifunc , core::optimization::MinimizerOptions , core::optimization::symmetry::SymAtomTreeMultifunc
• deriv_check_result_ : core::optimization::AtomTreeMinimizer , core::optimization::AtomTreeMultifunc , core::optimization::CartesianMinimizer , core::optimization::CartesianMultifunc
• deriv_check_results_ : core::optimization::NumericalDerivCheckResult
• deriv_check_to_stdout_ : core::optimization::MinimizerOptions
• deriv_check_verbose_ : core::optimization::AtomTreeMultifunc , core::optimization::CartesianMultifunc , core::optimization::MinimizerOptions , core::optimization::symmetry::SymAtomTreeMultifunc
• deriv_phi_ : core::pack::dunbrack::cenrot::CentroidRotamerSampleData
• deriv_psi_ : core::pack::dunbrack::cenrot::CentroidRotamerSampleData
• deriv_type2name_ : core::scoring::hbonds::HBondTypeManager
• derivative_atom_types_ : core::scoring::disulfides::DisulfideAtomIndices
• derivative_graph_ : core::scoring::symmetry::SymmetricEnergies
• derivs_ : core::scoring::hbonds::HBond
• design_disabled_ : core::pack::task::ResidueLevelTask_
• designing_ : core::pack::task::ResidueLevelTask_
• desired_result_ : core::chemical::ResidueSelectorSingle
• destruction_obs_hub_ : core::pose::Pose
• details : update_ResidueType_enum_files.EnumInfo
• dfade_max_ : core::scoring::hbonds::FadeInterval
• dfade_min_ : core::scoring::hbonds::FadeInterval
• dG_dCi_ : core::scoring::FACTSResidueInfo
• dhist_ : core::scoring::saxs::SAXSEnergy
• DHO_Haro_scOrbH_splines_ : core::scoring::orbitals::OrbitalsLookup
• DHO_Hpol_bbOrbH_splines_ : core::scoring::orbitals::OrbitalsLookup
• DHO_Hpol_scOrbH_splines_ : core::scoring::orbitals::OrbitalsLookup
• Di_ : core::scoring::FACTSResidueInfo
• die_ : core::scoring::etable::coulomb::Coulomb
• dihedral_ : core::pack::dunbrack::cenrot::CentroidRotamerSampleData
• dihedral_atom_sets_ : core::chemical::ResidueType
• dihedral_constraint_energy_ : core::scoring::constraints::ConstraintEdge
• dihedrals_for_atom_ : core::chemical::ResidueType
• dime : core::scoring::APBSConfig
• dimer1_ : core::scoring::DimerPairing
• dimer2_ : core::scoring::DimerPairing
• dimer_neighbor : core::scoring::Strands
• dip_score_ : core::scoring::methods::ResidualDipolarCouplingEnergy
• directory_ : core::chemical::AtomTypeSet , core::chemical::orbitals::OrbitalTypeSet
• dis2_step_ : core::scoring::etable::TableLookupEvaluator
• disabled_ : core::pack::task::ResidueLevelTask_
• disallow_quench_ : core::pack::annealer::SimAnnealerBase , core::pack::task::PackerTask_
• disallowed_aas_ : core::pack::task::operation::DisallowIfNonnative , core::pack::task::operation::DisallowIfNonnativeRLT
• disallowed_resids_ : core::pack::task::operation::OptH
• dist : core::pose::rna::RNA_SuiteAssignment
• dist_cut2_ : core::scoring::geometric_solvation::GeometricSolEnergyEvaluator
• dist_cutoff2_ : core::scoring::rna::RNA_FullAtomStackingEnergy
• dist_cutoff_ : core::scoring::rna::data::RNA_DataBackboneEnergy , core::scoring::rna::RNA_FullAtomStackingEnergy
• dist_fade_ : core::scoring::rna::data::RNA_DataBackboneEnergy
• dist_pow_ : core::pose::rna::RNA_SuiteName
• distance : core::scoring::sc::_RESULTS
• distance_ : core::chemical::Bond , core::chemical::orbitals::ICoorOrbitalData , core::chemical::orbitals::OrbitalType , core::pack::dunbrack::cenrot::CentroidRotamerSampleData , core::pack::task::residue_selector::NeighborhoodResidueSelector
• distance_cutoff_ : core::pack::task::residue_selector::NumNeighborsSelector
• distance_squared : core::scoring::etable::AtomPairEnergy
• distance_table_ : core::scoring::methods::GoapEnergy
• distances_ : core::chemical::RigidDistanceVisitor
• distbin_map_ : core::scoring::methods::GoapEnergy
• distinguish_backbone_and_sidechain_ : core::pack::interaction_graph::OnTheFlyNode , core::pack::interaction_graph::SymmOnTheFlyNode
• disulf_atom_index_ : core::scoring::disulfides::DisulfideAtomIndices
• disulf_ssdist_cutoff_ : core::scoring::disulfides::FullatomDisulfidePotential
• disulfide_atom_indices_ : core::scoring::disulfides::CentroidDisulfideEnergyContainer , core::scoring::disulfides::DisulfideMatchingEnergyContainer , core::scoring::disulfides::FullatomDisulfideEnergyContainer
• disulfide_cb_dist_cutoff : core::scoring::disulfides::CentroidDisulfidePotential
• disulfide_index_ : core::scoring::disulfides::CentroidDisulfideNeighborConstIterator , core::scoring::disulfides::CentroidDisulfideNeighborIterator , core::scoring::disulfides::DisulfideMatchingNeighborConstIterator , core::scoring::disulfides::DisulfideMatchingNeighborIterator , core::scoring::disulfides::DisulfResNeighbConstIterator , core::scoring::disulfides::DisulfResNeighbIterator
• disulfide_info_ : core::scoring::disulfides::CentroidDisulfideEnergyContainer , core::scoring::disulfides::DisulfideMatchingEnergyContainer , core::scoring::disulfides::FullatomDisulfideEnergyContainer
• disulfide_matching_potential_ : core::scoring::ScoringManager
• disulfide_partners_ : core::scoring::disulfides::CentroidDisulfideEnergyContainer , core::scoring::disulfides::DisulfideMatchingEnergyContainer , core::scoring::disulfides::FullatomDisulfideEnergyContainer
• disulfide_residue_types_ : core::scoring::disulfides::CentroidDisulfideEnergyContainer , core::scoring::disulfides::DisulfideMatchingEnergyContainer , core::scoring::disulfides::FullatomDisulfideEnergyContainer
• disulfides_ : core::io::raw_data::DisulfideFile
• djs_id_2_hphobe_index_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• djs_rep_node_index_2_cc_index_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• dlazy_edge_vector_ : core::pack::interaction_graph::DoubleLazyInteractionGraph
• dlig_mem_limit_ : core::pack::task::PackerTask_
• dljatr_ : core::scoring::etable::Etable , core::scoring::etable::TableLookupEvaluator , core::scoring::rna::RNA_LJ_BaseEnergy
• dljrep_ : core::scoring::etable::Etable , core::scoring::etable::TableLookupEvaluator , core::scoring::rna::RNA_LJ_BaseEnergy
• dml_dx : core::scoring::cryst::XtalMLEnergy
• DMS_low_resolution_potential_ : core::scoring::rna::data::RNA_ChemicalMappingEnergy , core::scoring::rna::data::RNA_DMS_LowResolutionPotential
• DMS_potential_ : core::scoring::rna::data::RNA_ChemicalMappingEnergy , core::scoring::rna::data::RNA_DMS_Potential
• DMS_potential_binding_energy_ : core::scoring::rna::data::RNA_DMS_Potential
• DMS_potential_is_bonded_ : core::scoring::rna::data::RNA_DMS_Potential
• DMS_potential_occ_ : core::scoring::rna::data::RNA_DMS_Potential
• DMS_stats_ : core::scoring::rna::data::RNA_DMS_Potential
• DMS_values_ : core::scoring::rna::data::RNA_DMS_LowResolutionPotential , core::scoring::rna::data::RNA_DMS_Potential
• dna_base_distance_constraints_ : core::scoring::dna::DNATorsionEnergy
• DNA_base_potential_ : core::scoring::ScoringManager
• dna_dr_potential_ : core::scoring::ScoringManager
• dna_sugar_close_constraints_ : core::scoring::dna::DNATorsionEnergy
• dna_torsion_constraints_ : core::scoring::dna::DNATorsionEnergy
• dna_torsion_potential_ : core::scoring::dna::DNATorsionEnergy , core::scoring::ScoringManager
• dnabform_ : core::scoring::ScoringManager
• dneglnrotprob_dbb_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• dnmtr_ : core::scoring::FACTSResidueInfo
• do_apprx_ : core::scoring::FACTSPotential
• do_classic_intrares_ : core::scoring::etable::BaseEtableEnergy< Derived >
• DOA_orb_orb_splines_ : core::scoring::orbitals::OrbitalsLookup
• dof_change_propagates_to_younger_siblings_ : core::kinematics::tree::BondedAtom
• dof_changeset_ : core::kinematics::AtomTree
• dof_constraints_ : core::scoring::constraints::ConstraintSet
• dof_deriv_1benmeths_ : core::scoring::MinimizationNode
• dof_deriv_2benmeths_ : core::scoring::MinimizationNode
• dof_id2torsion_id_ : core::optimization::symmetry::SymMinimizerMap
• dof_id_ : core::id::DOF_ID_Range , core::optimization::DOF_DataPoint , core::scoring::constraints::DOF_Constraint
• dof_id_map_ : core::kinematics::MoveMap
• dof_map_ : core::id::DOF_ID_Map< T >
• dof_mask_ : core::pack::scmin::AtomTreeSCMinMinimizerMap
• dof_moved_ : core::conformation::Conformation
• dof_node_pointer_ : core::optimization::MinimizerMap , core::optimization::symmetry::SymMinimizerMap
• dof_nodes_ : core::optimization::MinimizerMap , core::optimization::symmetry::SymMinimizerMap , core::pack::scmin::AtomTreeSCMinMinimizerMap
• dof_refold_index_ : core::kinematics::tree::Atom_
• dof_start_for_focused_residue_ : core::pack::scmin::AtomTreeSCMinMinimizerMap
• dof_step_data_ : core::optimization::NumDerivCheckData
• dof_type_map_ : core::kinematics::MoveMap
• dof_val_ : core::optimization::DerivCheckDataPoint , core::optimization::DOF_DataPoint
• dofid_to_atoms_ : core::pack::scmin::CartSCMinMinimizerMap
• dofname2jnum_ : core::conformation::symmetry::SymmetryInfo
• dofs_ : core::conformation::symmetry::SymmData , core::conformation::symmetry::SymmetryInfo
• domain_map_ : core::optimization::CartesianMinimizerMap , core::optimization::MinimizerMap , core::optimization::symmetry::SymMinimizerMap , core::pack::scmin::CartSCMinMinimizerMap , core::pack::scmin::SCMinMinimizerMap , core::scoring::Energies , core::scoring::NeighborList
• domain_visited_ : core::scoring::loop_graph::LoopGraph
• dominant_ : core::conformation::ResidueKinWriter
• dominant_suites : core::pose::rna::RNA_SuiteName
• don_chem_type2name_ : core::scoring::hbonds::HBondTypeManager
• don_deriv : core::scoring::hbonds::HBondDerivs
• don_hatm_ : core::scoring::hbonds::HBond
• don_hatm_is_backbone_ : core::scoring::hbonds::HBond
• don_hatm_is_protein_backbone_ : core::scoring::hbonds::HBond
• don_res_ : core::scoring::hbonds::HBond
• don_res_is_dna_ : core::scoring::hbonds::HBond
• don_res_is_protein_ : core::scoring::hbonds::HBond
• don_strength_lookup_ : core::scoring::hbonds::HBondDatabase
• don_type_ : core::scoring::hbonds::HBEvalTuple
• done_loading_ : core::scoring::motif::MotifHashManager
• donor_occ_data_ : core::scoring::geometric_solvation::DatabaseOccSolEne
• dont_compute_cav_balls : core::scoring::packstat::SasaOptions
• dot_coords_ : core::pack::interaction_graph::RotamerDots
• dots : core::scoring::sc::_RESULTS , core::scoring::sc::MolecularSurfaceCalculator
• dots_coverage_count_ : core::pack::interaction_graph::DotSphere
• double_lazy_ig_ : core::pack::task::PackerTask_
• downstream_stub_atoms_ : core::fragment::DownJumpSRFD
• Dphi_ : core::scoring::func::KarplusFunc
• drdz : core::scoring::packstat::Circle
• drotprob_dbb_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• ds_ : core::scoring::SecondaryStructurePotential
• dSA_dDi_ : core::scoring::FACTSResidueInfo
• dshift2_bb_ : core::scoring::FACTSPotential
• dshift2_bs_ : core::scoring::FACTSPotential
• dshift2_saltbridge_ : core::scoring::FACTSPotential
• dshift2_sc_ : core::scoring::FACTSPotential
• dslf_ca_dih_ : core::scoring::disulfides::FullatomDisulfideEnergyComponents
• dslf_cbs_ds_ : core::scoring::disulfides::FullatomDisulfideEnergyComponents
• dslf_cs_ang_ : core::scoring::disulfides::FullatomDisulfideEnergyComponents
• dslf_fa13_ : core::scoring::disulfides::FullatomDisulfideEnergyComponents
• dslf_ss_dih_ : core::scoring::disulfides::FullatomDisulfideEnergyComponents
• dslf_ss_dst_ : core::scoring::disulfides::FullatomDisulfideEnergyComponents
• dslfc_ang_ : core::scoring::disulfides::CentroidDisulfideEnergyComponents
• dslfc_bb_dih_ : core::scoring::disulfides::CentroidDisulfideEnergyComponents
• dslfc_cb_dih_ : core::scoring::disulfides::CentroidDisulfideEnergyComponents
• dslfc_cb_dst_ : core::scoring::disulfides::CentroidDisulfideEnergyComponents
• dslfc_cen_dst_ : core::scoring::disulfides::CentroidDisulfideEnergyComponents
• dslfc_rot_ : core::scoring::disulfides::DisulfideMatchingEnergyComponents
• dslfc_RT_ : core::scoring::disulfides::DisulfideMatchingEnergyComponents
• dslfc_trans_ : core::scoring::disulfides::DisulfideMatchingEnergyComponents
• dsolv1_ : core::scoring::etable::Etable , core::scoring::etable::MembEtable , core::scoring::membrane::FaMPSolvEnergy , core::scoring::methods::Fa_MbsolvEnergy , core::scoring::methods::LK_BallEnergy , core::scoring::methods::LK_hack
• dsolv2_ : core::scoring::etable::MembEtable , core::scoring::membrane::FaMPSolvEnergy , core::scoring::methods::Fa_MbsolvEnergy
• dsolv_ : core::scoring::etable::Etable , core::scoring::etable::TableLookupEvaluator , core::scoring::membrane::FaMPSolvEnergy , core::scoring::methods::Fa_MbsolvEnergy
• dsolv_dBR_ : core::scoring::FACTSResidueInfo
• dsq_ : core::conformation::PointGraphEdgeData
• dsqr_ : core::scoring::EnergyEdge
• dss_kappa1 : core::scoring::disulfides::FullatomDisulfideParams13
• dss_kappa2 : core::scoring::disulfides::FullatomDisulfideParams13
• dss_logA1 : core::scoring::disulfides::FullatomDisulfideParams13
• dss_logA2 : core::scoring::disulfides::FullatomDisulfideParams13
• dss_mu1 : core::scoring::disulfides::FullatomDisulfideParams13
• dss_mu2 : core::scoring::disulfides::FullatomDisulfideParams13
• dssp_secstruct_ : core::scoring::dssp::Dssp
• dsurf : core::scoring::packing::SurfVolDeriv
• dummy_ : core::scoring::dna::DNABFormPotential
• dummy_deriv : core::scoring::rna::RNA_LowResolutionPotential
• dummy_distance : core::scoring::GenBornPotential
• dummy_distance_ : core::scoring::FACTSPotential
• dummy_radius : core::scoring::GenBornPotential
• dummy_radius_ : core::scoring::FACTSPotential
• dummy_sample_ : core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary
• dummy_scale : core::scoring::GenBornPotential
• dummy_scale_ : core::scoring::FACTSPotential
• dun02_ : core::pack::dunbrack::SingleResidueDunbrackLibrary , core::pack::dunbrack::SingleResiduePeptoidLibrary
• dun10 : core::init::pre_talaris_2013_behavior_settings
• dvol : core::scoring::packing::SurfVolDeriv
• dw_dr_ : core::scoring::elec::FAElecContextData
• dweight_ : core::scoring::MinimizationEdge , core::scoring::MinimizationNode
• dx : core::scoring::APBSResult , core::scoring::packstat::LR_AtomData , core::scoring::packstat::LR_MP_AtomData
• dx_filename_ : core::scoring::PoissonBoltzmannPotential
• dy : core::scoring::APBSResult , core::scoring::packstat::LR_AtomData , core::scoring::packstat::LR_MP_AtomData
• dz : core::scoring::APBSResult