- u -

• ub_ : core::kinematics::TreeVizBuilder , core::scoring::constraints::BoundFunc
• unf_state_ : core::scoring::ScoringManager
• unf_state_potential_ : core::scoring::methods::UnfoldedStateEnergy
• unfolded_energies_type_ : core::scoring::methods::EnergyMethodOptions
• unfolded_energy_ : core::scoring::UnfoldedStatePotential
• unfolded_potential_file_weights_ : core::scoring::UnfoldedStatePotential
• uninitialized_energy : core::pack::annealer::MultiCoolAnnealer
• unique_ref_poses_ : core::import_pose::atom_tree_diffs::AtomTreeDiff
• unrecognized_atoms_ : core::pose::PDBInfo
• unrecognized_res_num2name_ : core::pose::PDBInfo
• unrecognized_res_size_ : core::pose::PDBInfo
• unweighted_score_coeff : core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• up_to_date_ : core::io::raw_data::DisulfideFile
• upper : core::chemical::sdf::BondData
• upper_bound_ : core::scoring::func::SOGFunc_Impl , core::scoring::nv::NVscore , core::scoring::PoissonBoltzmannPotential
• upper_bound_dy_ : core::scoring::func::SplineFunc
• upper_bound_squared_ : core::scoring::nv::NVscore
• upper_bound_x_ : core::scoring::func::SplineFunc
• upper_bound_y_ : core::scoring::func::SplineFunc
• upper_connect_angle_params_ : core::scoring::methods::ResidueCartBondedParameters
• upper_connect_id_ : core::chemical::ResidueType
• upper_edges_ : core::graph::UEVertex< V, E >
• upper_lower_ : core::chemical::SetPolymerConnectAtom
• upper_nblist_ : core::scoring::NeighborList
• upper_range_dof_jumps1_ : core::conformation::symmetry::SymDof
• upper_range_dof_jumps2_ : core::conformation::symmetry::SymDof
• upper_vertex_ : core::graph::UEEdge< V, E >
• upper_vertex_index_ : core::graph::UEEdge< V, E >
• upstream_stub_atoms_ : core::fragment::DownJumpSRFD
• ur_conn_ : core::conformation::PseudoBond
• url_ : core::SVNVersion
• use_2prime_OH_potential_ : core::scoring::rna::RNA_TorsionPotential
• use_altorigin : core::scoring::electron_density::ElectronDensity
• use_bicubic_interpolation : core::init::pre_talaris_2013_behavior_settings
• use_big_polar_H_ : core::scoring::sasa::SasaMethod
• use_charge : core::scoring::APBSConfig::I_PARAM
• use_diel : core::scoring::APBSConfig::I_PARAM
• use_focus_selector_ : core::pack::task::residue_selector::NeighborhoodResidueSelector
• use_hb_env_dep_ : core::scoring::hbonds::HBondOptions
• use_hb_env_dep_DNA_ : core::scoring::hbonds::HBondOptions
• use_intra_dna_cp_crossover_4_ : core::scoring::methods::LK_BallEnergy
• use_kappa : core::scoring::APBSConfig::I_PARAM
• use_log_score_ : core::scoring::func::GaussianFunc
• use_multicool_annealer_ : core::pack::task::operation::OptH
• use_nblist_ : core::optimization::MinimizerOptions , core::scoring::Energies
• use_nblist_auto_update_ : core::scoring::Energies
• use_ncaa_rotlib_ : core::chemical::ResidueType
• use_new_potential_ : core::scoring::rna::RNA_TorsionPotential
• use_peptoid_rotlib_ : core::chemical::ResidueType
• use_phenix_sugar_close_ : core::scoring::rna::RNA_SugarCloseEnergy
• use_phipsi_dep_ : core::scoring::OmegaTether
• use_pot : core::scoring::APBSConfig::I_PARAM
• use_pssm_features_ : core::scoring::methods::NMerSVMEnergy
• use_residue_type_theta0_ : core::scoring::mm::MMBondAngleResidueTypeParamSet
• use_sp2_chi_penalty_ : core::scoring::hbonds::HBondOptions
• use_symmetry_ : core::conformation::symmetry::SymmetryInfo
• useres1_ : core::scoring::motif::ResPairMotifQuery
• useres1_ph_ : core::scoring::motif::ResPairMotifQuery
• useres1_po_ : core::scoring::motif::ResPairMotifQuery
• useres2_ : core::scoring::motif::ResPairMotifQuery
• useres2_ph_ : core::scoring::motif::ResPairMotifQuery
• useres2_po_ : core::scoring::motif::ResPairMotifQuery
• using_extended_method_ : core::scoring::geometric_solvation::ContextDependentGeometricSolEnergy , core::scoring::geometric_solvation::ContextIndependentGeometricSolEnergy , core::scoring::rna::StackElecEnergy