Here is a list of all class members with links to the classes they belong to:
- _ -
- __init__()
: update_ResidueType_enum_files.EnumInfo
- __pad0__
: core::scoring::carbon_hbonds::CarbonHBondEnergy
, core::scoring::constraints::ConstraintsEnergy
, core::scoring::cryst::XtalMLEnergy
, core::scoring::custom_pair_distance::FullatomCustomPairDistanceEnergy
, core::scoring::disulfides::CentroidDisulfideEnergy
, core::scoring::disulfides::DisulfideMatchingEnergy
, core::scoring::disulfides::FullatomDisulfideEnergy
, core::scoring::elec::FA_ElecEnergy
, core::scoring::elec::FA_GrpElecEnergy
, core::scoring::electron_density::ElecDensAllAtomCenEnergy
, core::scoring::electron_density::ElecDensCenEnergy
, core::scoring::electron_density::ElecDensEnergy
, core::scoring::electron_density::FastDensEnergy
, core::scoring::electron_density::PattersonCorrEnergy
, core::scoring::electron_density_atomwise::ElecDensAtomwiseEnergy
, core::scoring::etable::BaseEtableEnergy< Derived >
, core::scoring::fiber_diffraction::FiberDiffractionEnergy
, core::scoring::fiber_diffraction::FiberDiffractionEnergyDens
, core::scoring::geometric_solvation::ContextDependentGeometricSolEnergy
, core::scoring::geometric_solvation::ContextIndependentGeometricSolEnergy
, core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
, core::scoring::geometric_solvation::OccludedHbondSolEnergy
, core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody
, core::scoring::hackaro::HackAroEnergy
, core::scoring::hbonds::HBondEnergy
, core::scoring::interface_::DDPscore
, core::scoring::loop_graph::LoopCloseEnergy
, core::scoring::methods::IntermolEnergy
, core::scoring::methods::MissingEnergy
, core::scoring::MinimizationEdge
, core::scoring::MinimizationGraph
, core::scoring::MinimizationNode
, core::scoring::nv::NVscore
, core::scoring::orbitals::OrbitalsScore
, core::scoring::packing::HolesEnergy
, core::scoring::packing::HolesEnergyRes
, core::scoring::packing::SurfEnergy
, core::scoring::packing::SurfVolEnergy
, core::scoring::rna::chemical_shift::RNA_ChemicalShiftEnergy
, core::scoring::rna::data::RNA_ChemicalMappingEnergy
, core::scoring::rna::data::RNA_DataBackboneEnergy
, core::scoring::rna::RG_Energy_RNA
, core::scoring::rna::RNA_FullAtomStackingEnergy
, core::scoring::rna::RNA_JR_SuiteEnergy
, core::scoring::rna::RNA_LJ_BaseEnergy
, core::scoring::rna::RNA_Mg_Energy
, core::scoring::rna::RNA_PairwiseLowResolutionEnergy
, core::scoring::rna::RNA_SuiteEnergy
, core::scoring::rna::RNA_TorsionEnergy
, core::scoring::rna::RNA_VDW_Energy
, core::scoring::rna::StackElecEnergy
, core::scoring::saxs::FastSAXSEnergy
, core::scoring::sym_e::symEnergy
, core::scoring::vdwaals::VDW_Energy
- __pad1__
: core::scoring::constraints::ConstraintsEnergy
, core::scoring::etable::BaseEtableEnergy< Derived >
, core::scoring::MinimizationNode
- _abs_tolerance
: core::optimization::BrentLineMinimization
- _add_seq_label()
: core::environment::SequenceAnnotation
- _add_weights_from_file()
: core::scoring::ScoreFunction
- _ax
: core::optimization::BrentLineMinimization
- _bx
: core::optimization::BrentLineMinimization
- _converged
: core::optimization::JJH_Minimizer
- _dE_dvars
: core::optimization::func_1d
- _deriv_count
: core::optimization::func_1d
- _deriv_sum
: core::optimization::LineMinimizationAlgorithm
- _eval_count
: core::optimization::func_1d
- _eval_point
: core::optimization::func_1d
- _func
: core::optimization::func_1d
, core::optimization::JJH_Minimizer
, core::optimization::LineMinimizationAlgorithm
- _func_to_beat
: core::optimization::LineMinimizationAlgorithm
- _get_direction
: core::optimization::JJH_Minimizer
- _last_accepted_step
: core::optimization::LineMinimizationAlgorithm
- _line_min
: core::optimization::JJH_Minimizer
- _nonmonotone
: core::optimization::LineMinimizationAlgorithm
, core::optimization::StrongWolfeLineMinimization
- _num_calls
: core::optimization::ArmijoLineMinimization
, core::optimization::StrongWolfeLineMinimization
- _num_linemin_calls
: core::optimization::LineMinimizationAlgorithm
- _read_file()
: core::io::silent::SilentFileData
- _search_direction
: core::optimization::func_1d
- _silent
: core::optimization::LineMinimizationAlgorithm
- _starting_point
: core::optimization::func_1d
- _static_type_name()
: core::fragment::BBTorsionAndAnglesSRFD
, core::fragment::BBTorsionSRFD
, core::fragment::DownJumpSRFD
, core::fragment::Frame
, core::fragment::JumpingFrame
, core::fragment::SecstructSRFD
, core::fragment::SingleResidueFragData
, core::fragment::UpJumpSRFD
- _stored_derivatives
: core::optimization::LineMinimizationAlgorithm
- _tolerance
: core::optimization::LineMinimizationAlgorithm
- _write_silent_struct()
: core::io::silent::SilentFileData
- _xx
: core::optimization::BrentLineMinimization