Here is a list of all class members with links to the classes they belong to:

- t -

• T_ : core::scoring::ResidualDipolarCoupling
• T_bins : core::scoring::dna::DirectReadoutPotential
• table_ : core::scoring::DenseEnergyContainer , core::scoring::DenseNeighborConstIterator , core::scoring::DenseNeighborIterator , core::scoring::OneToAllEnergyContainer , core::scoring::OneToAllNeighborConstIterator , core::scoring::OneToAllNeighborIterator
• table_size_ : core::pack::interaction_graph::AminoAcidNeighborSparseMatrix< T >
• TableLookupEtableEnergy() : core::scoring::etable::TableLookupEtableEnergy
• TableLookupEvaluator() : core::scoring::etable::TableLookupEvaluator
• tables_ : core::scoring::PeptideBondedEnergyContainer , core::scoring::PeptideBondedNeighborConstIterator , core::scoring::PeptideBondedNeighborIterator
• tabulate() : core::scoring::saxs::FormFactor , core::scoring::saxs::FormFactorManager
• tag : core::conformation::signals::ConnectionEvent
• Tag : core::conformation::signals::ConnectionEvent
• tag : core::conformation::signals::IdentityEvent
• Tag : core::conformation::signals::IdentityEvent
• tag : core::conformation::signals::LengthEvent
• Tag : core::conformation::signals::LengthEvent
• tag : core::optimization::EItem
• Tag : core::pack::task::operation::ResFilterFactory , core::pack::task::operation::ResLvlTaskOperationFactory , core::pack::task::operation::TaskOperationFactory
• tag() : core::scoring::motif::ResPairMotif
• tag_ : core::fragment::CacheWrapper< T, XCacheUnit > , core::scoring::methods::BBDepCartBondedParameters , core::scoring::packstat::MultiProbePoseAccumulator
• tag_idx_ : core::import_pose::atom_tree_diffs::AtomTreeDiff
• TagCOP : core::pack::task::operation::OperateOnCertainResidues , core::pack::task::operation::OperateOnResidueSubset , core::pack::task::operation::ResFilter , core::pack::task::operation::ResFilterFactory , core::pack::task::operation::ResLvlTaskOperation , core::pack::task::operation::ResLvlTaskOperationFactory , core::pack::task::operation::TaskOperation , core::pack::task::operation::TaskOperationFactory
• TagOP : core::pack::task::operation::ResFilterFactory , core::pack::task::operation::TaskOperationFactory
• tags() : core::import_pose::pose_stream::SilentFilePoseInputStream , core::io::silent::SilentFileData
• tags_ : core::import_pose::pose_stream::SilentFilePoseInputStream , core::scoring::rna::RNA_SuitePotential
• take_coordinates_from_pose() : core::scoring::BB_Pos
• takeoff_atom() : core::scoring::loop_graph::LoopScoreInfo
• takeoff_atom_ : core::scoring::loop_graph::LoopScoreInfo
• takeoff_domain() : core::scoring::loop_graph::Loop
• takeoff_domain_ : core::scoring::loop_graph::Loop
• takeoff_pos() : core::scoring::loop_graph::Loop
• takeoff_pos_ : core::scoring::loop_graph::Loop
• target_function_ : core::scoring::cryst::PhenixInterface
• target_path_ : core::indexed_structure_store::BinaryFragmentStoreBackend
• target_residue_type_ : core::pack::task::ResidueLevelTask_
• target_type() : core::pack::task::PackerTask_ , core::pack::task::ResidueLevelTask , core::pack::task::ResidueLevelTask_
• task() : core::pack::rotamer_set::RotamerSets
• task_ : core::pack::rotamer_set::RotamerSets
• task_mode() : core::pack::task::ResidueLevelTask_
• task_operation_creator_map_ : core::pack::task::operation::TaskOperationFactory
• task_string() : core::pack::task::PackerTask , core::pack::task::PackerTask_
• TaskFactory() : core::pack::task::TaskFactory
• TaskOperation : core::pack::task::operation::ReplicateTask , core::pack::task::TaskFactory
• TaskOperationCOP : core::pack::task::TaskFactory
• TaskOperationCreatorMap : core::pack::task::operation::TaskOperationFactory
• TaskOperationFactory() : core::pack::task::operation::TaskOperationFactory
• TaskOperationOP : core::pack::task::operation::NoRepackDisulfides , core::pack::task::operation::OptCysHG , core::pack::task::operation::OptH , core::pack::task::operation::ReplicateTask , core::pack::task::TaskFactory
• TaskOperationOPs : core::pack::task::operation::TaskOperationFactory
• TaskOperationRegistrator() : core::pack::task::operation::TaskOperationRegistrator< T >
• Tau() : core::scoring::FACTSPotential
• Tau_ : core::scoring::FACTSPotential
• tau_angles : core::chemical::RingConformer
• TCacheUnit : core::fragment::CacheWrapper< T, XCacheUnit >
• TCacheUnitAP : core::fragment::CacheWrapper< T, XCacheUnit >
• TCacheUnitOP : core::fragment::CacheWrapper< T, XCacheUnit >
• tccw : core::scoring::packstat::Circle
• tcw : core::scoring::packstat::Circle
• tell_neighbors_to_prep_for_relaxation() : core::pack::interaction_graph::FASTERNode
• temp() : core::pose::UnrecognizedAtomRecord , core::scoring::APBSConfig::R_PARAM , core::sequence::SequenceCoupling , core::sequence::SequenceProfile
• temp1() : core::scoring::AtomNeighbor
• temp1_ : core::scoring::AtomNeighbor
• temp2() : core::scoring::AtomNeighbor
• temp2_ : core::scoring::AtomNeighbor
• temp3() : core::scoring::AtomNeighbor
• temp3_ : core::scoring::AtomNeighbor
• temp4() : core::scoring::AtomNeighbor
• temp4_ : core::scoring::AtomNeighbor
• temp_ : core::pose::UnrecognizedAtomRecord , core::sequence::SequenceCoupling , core::sequence::SequenceProfile
• temp_EMap_ : core::scoring::constraints::AmbiguousConstraint
• tempdir_ : core::scoring::cryst::PhenixInterface
• temperature : core::io::pdb::AtomInformation , core::pose::PDBInfo::AtomRecord , core::pose::PDBInfo
• temperature_ : core::pack::annealer::SimAnnealerBase
• TEMPLATE_HYBRIDIZATION_HISTORY : core::pose::datacache::CacheableDataType
• temporarily_fix_everything() : core::pack::task::PackerTask , core::pack::task::PackerTask_
• temporarily_set_pack_residue() : core::pack::task::PackerTask , core::pack::task::PackerTask_
• Temps : core::io::pdb::FileData
• temps : core::io::pdb::ResidueInformation
• tenA_ : core::scoring::TenANeighborGraph
• tenA_edge_pool_ : core::scoring::TenANeighborGraph
• tenA_neighbor_graph() : core::scoring::Energies
• tenA_squared_ : core::scoring::TenANeighborGraph
• TenANeighborEdge() : core::scoring::TenANeighborEdge
• TenANeighborGraph() : core::scoring::TenANeighborGraph
• TenANeighborNode() : core::scoring::TenANeighborNode
• Tensor : core::scoring::ResidualDipolarCoupling
• tensor() : core::scoring::ResidualDipolarCoupling
• Tensor5 : core::scoring::ResidualDipolarCoupling
• tensorDa : core::scoring::data_structDa , core::scoring::data_structDaR
• tensorR : core::scoring::data_structDaR , core::scoring::data_structR
• terCount : core::io::pdb::AtomInformation , core::io::pdb::ResidueInformation
• term_length() : core::scoring::methods::NMerSVMEnergy
• term_length_ : core::scoring::methods::NMerSVMEnergy
• termini_feature() : core::scoring::methods::ProQ_Energy
• termini_penalty() : core::scoring::MembranePotential
• the_config_file_ : core::scoring::saxs::SAXSEnergy
• THEORETICAL_MODEL : core::io::pdb::HeaderInformation
• theta() : core::chemical::Adduct , core::chemical::AtomICoor , core::chemical::orbitals::ICoorOrbitalData , core::pose::Pose
• theta0() : core::scoring::mm::MMBondAngleResidueTypeParam
• theta0_ : core::scoring::mm::MMBondAngleResidueTypeParam
• theta_ : core::chemical::AddConnect , core::chemical::Adduct , core::chemical::AtomICoor , core::chemical::orbitals::ICoorOrbitalData , core::chemical::SetICoor , core::kinematics::tree::BondedAtom
• thickness() : core::scoring::Membrane_FAEmbed
• thickness_ : core::conformation::membrane::MembraneInfo , core::scoring::hbonds::HBondEnergy , core::scoring::Membrane_FAEmbed , core::scoring::packstat::Slice
• ThirdLoop() : core::scoring::sc::MolecularSurfaceCalculator
• this_weak_ptr_ : core::environment::FoldTreeSketch::Node , core::kinematics::AtomTree
• threshold() : core::pack::task::residue_selector::NumNeighborsSelector
• threshold_ : core::pack::task::residue_selector::NumNeighborsSelector
• THRESHOLD_ACCEPTANCE_RATE_FOR_RPE_STORAGE : core::pack::interaction_graph::LinearMemNode , core::pack::interaction_graph::SymmLinearMemNode
• throw_on_double_registration_ : core::pack::task::residue_selector::ResidueSelectorFactory
• tighten_memory() : core::fragment::picking_old::vall::VallLibrary , core::fragment::picking_old::vall::VallSection , core::pose::PDBInfo
• time_data_mean_ : core::scoring::methods::D2H_SA_Energy
• time_data_std_ : core::scoring::methods::D2H_SA_Energy
• TIME_TO_UPDATE : core::scoring::TenANeighborNode
• title() : core::io::pdb::HeaderInformation
• title_ : core::io::pdb::HeaderInformation
• TM : core::scoring::TMscoreStore
• TM10 : core::scoring::TMscoreStore
• TM10_max : core::scoring::TMscoreStore
• TM_max : core::scoring::TMscoreStore
• tm_projection_penalty() : core::scoring::MembranePotential
• TM_sum : core::scoring::TMscoreStore
• TM_sum10 : core::scoring::TMscoreStore
• TMap : core::fragment::MapCacheUnit< T >
• tmh_inserted() : core::scoring::MembraneTopology
• tmh_inserted_ : core::scoring::MembraneTopology
• tmhelix() : core::scoring::MembraneTopology
• tmregion() : core::scoring::MembraneTopology
• tmregion_ : core::scoring::MembraneTopology
• TMscore() : core::scoring::TMscore
• TMscoreStore() : core::scoring::TMscoreStore
• to_string() : core::fragment::picking_old::vall::scores::VallFragmentScore , core::id::NamedAtomID , core::id::SequenceMapping , core::kinematics::FoldTree , core::scoring::constraints::Constraint , core::sequence::CompositeSequence , core::sequence::Sequence , core::sequence::SequenceAlignment
• tol() : core::scoring::func::FlatHarmonicFunc
• tol_ : core::scoring::func::FlatHarmonicFunc
• tolerance : core::optimization::DFPMinConvergedAbsolute , core::optimization::DFPMinConvergedFractional
• top_ : core::fragment::FragmentIO
• top_fragments() : core::fragment::picking_old::vall::VallLibrarian
• top_netstates_ : core::pack::annealer::MultiCoolAnnealer
• top_to_keep : core::pack::annealer::MultiCoolAnnealer
• topological_match_to() : core::kinematics::AtomTree
• topological_match_to_ : core::kinematics::AtomTree
• topological_observers() : core::kinematics::AtomTree
• topological_observers_ : core::kinematics::AtomTree
• topology_ : core::conformation::membrane::SpanningTopology , core::scoring::methods::ProQ_Energy
• topology_feature() : core::scoring::methods::ProQ_Energy
• TopOutFunc() : core::scoring::func::TopOutFunc
• tor_for_dof() : core::pack::scmin::AtomTreeSCMinMinimizerMap , core::pack::scmin::CartSCMinMinimizerMap , core::pack::scmin::SCMinMinimizerMap
• toroidal : core::scoring::sc::_RESULTS
• torsion() : core::conformation::Conformation , core::fragment::BBTorsionSRFD , core::id::TorsionID , core::pose::Pose , core::pose::rna::RNA_SuiteInfo
• torsion2index() : core::util::ABEGOManager
• torsion2index_level1() : core::util::ABEGOManager
• torsion2index_level2() : core::util::ABEGOManager
• torsion2index_level3() : core::util::ABEGOManager
• torsion2index_level4() : core::util::ABEGOManager
• torsion_ : core::id::TorsionID
• torsion_angle() : core::conformation::Conformation , core::kinematics::AtomTree
• torsion_angle_dof_id() : core::kinematics::AtomTree
• torsion_atom_ : core::chemical::AddConnect
• torsion_changes_move_other_monomers() : core::conformation::symmetry::SymmetryInfo
• torsion_changes_move_other_monomers_ : core::conformation::symmetry::SymmetryInfo
• torsion_id() : core::id::TorsionID_Range , core::optimization::DOF_Node
• torsion_id_ : core::id::TorsionID_Range , core::optimization::DOF_Node
• torsion_id_begin() : core::kinematics::MoveMap
• torsion_id_end() : core::kinematics::MoveMap
• torsion_id_map_ : core::kinematics::MoveMap
• torsion_ids_ : core::scoring::rna::RNA_SuitePotential
• torsion_is_independent() : core::conformation::symmetry::SymmetryInfo
• torsion_parameter : core::scoring::methods::ResidueCartBondedParameters
• torsion_parameters() : core::scoring::methods::ResidueCartBondedParameters
• torsion_params_ : core::scoring::methods::ResidueCartBondedParameters
• torsion_potential() : core::scoring::rna::RNA_EnergyMethodOptions
• torsion_potential_ : core::scoring::rna::RNA_EnergyMethodOptions
• torsion_scale_factor() : core::optimization::MinimizerMap , core::optimization::symmetry::SymMinimizerMap
• torsion_type_begin() : core::kinematics::MoveMap
• torsion_type_end() : core::kinematics::MoveMap
• torsion_type_map_ : core::kinematics::MoveMap
• TorsionFourierComponent() : core::scoring::dna::TorsionFourierComponent
• TorsionID : core::conformation::Conformation , core::conformation::symmetry::SymmetryInfo , core::id::TorsionID , core::kinematics::MoveMap , core::optimization::DOF_Node , core::pose::Pose
• TorsionID_Map : core::kinematics::MoveMap
• TorsionID_Range() : core::id::TorsionID_Range
• TorsionIDs : core::conformation::symmetry::SymmetryInfo
• torsions_ : core::fragment::BBTorsionSRFD
• torsions_indep_ : core::scoring::methods::IdealParametersDatabase
• TorsionType : core::kinematics::MoveMap
• TorsionTypeMap : core::kinematics::MoveMap
• tot_score() : core::scoring::motif::XformScore
• tot_surf : core::scoring::packing::SurfVol , core::scoring::packing::SurfVolDeriv
• tot_vol : core::scoring::packing::SurfVol , core::scoring::packing::SurfVolDeriv
• total() : core::scoring::saxs::DistanceHistogram
• total_area : core::scoring::packstat::AreaAccumulator
• total_atoms() : core::pose::Pose
• total_base_axis_score_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• total_base_pair_score_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• total_base_stack_axis_score_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• total_base_stack_score_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• total_base_stagger_score_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• total_counts_ : core::scoring::bin_transitions::BinTransitionData
• total_energies() : core::scoring::Energies
• total_energies_ : core::scoring::Energies
• total_energy() : core::pack::interaction_graph::SimpleInteractionGraph , core::scoring::Energies , core::scoring::loop_graph::LoopGraph , core::scoring::saxs::SAXSEnergy
• total_energy_ : core::scoring::Energies , core::scoring::loop_graph::LoopGraph
• total_energy_alternate_state_assignment_ : core::pack::interaction_graph::DensePDInteractionGraph , core::pack::interaction_graph::DoubleDensePDInteractionGraph , core::pack::interaction_graph::DoubleLazyInteractionGraph , core::pack::interaction_graph::FASTERInteractionGraph , core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > , core::pack::interaction_graph::LazyInteractionGraph , core::pack::interaction_graph::LinearMemoryInteractionGraph , core::pack::interaction_graph::PDInteractionGraph , core::pack::interaction_graph::SurfaceInteractionGraph< V, E, G > , core::pack::interaction_graph::SymmLinearMemoryInteractionGraph , core::pack::interaction_graph::SymmMinimalistInteractionGraph
• total_energy_current_state_assignment_ : core::pack::interaction_graph::DensePDInteractionGraph , core::pack::interaction_graph::DoubleDensePDInteractionGraph , core::pack::interaction_graph::DoubleLazyInteractionGraph , core::pack::interaction_graph::FASTERInteractionGraph , core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > , core::pack::interaction_graph::LazyInteractionGraph , core::pack::interaction_graph::LinearMemoryInteractionGraph , core::pack::interaction_graph::PDInteractionGraph , core::pack::interaction_graph::SurfaceInteractionGraph< V, E, G > , core::pack::interaction_graph::SymmLinearMemoryInteractionGraph , core::pack::interaction_graph::SymmMinimalistInteractionGraph
• total_exp_chemical_shift_data_points_ : core::scoring::rna::chemical_shift::RNA_ChemicalShiftPotential
• total_helices : core::scoring::Helices
• total_HH_dimer : core::scoring::Helices
• total_hsasa_ : core::pose::metrics::simple_calculators::SasaCalculator2 , core::scoring::sasa::SasaCalc
• total_hsasa_sc_ : core::pose::metrics::simple_calculators::SasaCalculator2 , core::scoring::sasa::SasaCalc
• total_number_abego() : core::util::ABEGOManager
• total_rel_hsasa_ : core::pose::metrics::simple_calculators::SasaCalculator2 , core::scoring::sasa::SasaCalc
• total_residue() : core::fragment::SecondaryStructure , core::kinematics::ResidueCoordinateChangeList , core::pack::rotamer_set::ContinuousRotamerSets , core::pack::rotamer_set::RotamerSets , core::pack::rotamer_set::RotamerSetsBase , core::pack::rotamer_set::RotamerSubsets , core::pack::rotamer_set::UnboundRotamersOperation , core::pack::task::PackerTask , core::pack::task::PackerTask_ , core::pose::MiniPose , core::pose::Pose , core::scoring::trie::TrieCollection
• total_residue_ : core::fragment::SecondaryStructure , core::kinematics::ResidueCoordinateChangeList , core::pack::rotamer_set::ContinuousRotamerSets , core::pack::rotamer_set::RotamerSets , core::pack::rotamer_set::RotamerSubsets , core::scoring::solid_surface::SurfaceEnergies
• total_rot_ : core::pack::rotamer_set::UnboundRotamersOperation
• total_rotamers_2_unique_rotamers() : core::scoring::trie::RotamerTrie< AT, CPDATA >
• total_rotamers_2_unique_rotamers_ : core::scoring::trie::RotamerTrie< AT, CPDATA >
• total_sasa_ : core::pose::metrics::simple_calculators::SasaCalculator2 , core::pose::metrics::simple_calculators::SasaCalculatorLegacy , core::scoring::sasa::SasaCalc
• total_sasa_sc_ : core::pose::metrics::simple_calculators::SasaCalculator2 , core::scoring::sasa::SasaCalc
• total_score : core::scoring::motif::MotifHits
• total_SS_dimer : core::scoring::Strands
• total_strands : core::scoring::Strands
• total_tmhelix_ : core::scoring::MembraneTopology
• totnum_abego_ : core::util::ABEGOManager
• trace() : core::io::rna::RDAT , core::scoring::packstat::trace
• trace_ : core::io::rna::RDAT , core::scoring::packstat::Event , core::scoring::ResidualDipolarCoupling
• traceback() : core::sequence::Aligner
• traces_ : core::scoring::packstat::Slice
• track_hpatch_E_min() : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• track_max_magnitude_surface_deltaE() : core::pack::interaction_graph::SurfaceBackgroundEdge< V, E, G > , core::pack::interaction_graph::SurfaceEdge< V, E, G >
• track_surface_E_min() : core::pack::interaction_graph::SurfaceNode< V, E, G >
• trajectory_ : core::pack::annealer::DebuggingAnnealer
• trajectory_file_name() : core::pack::annealer::FixbbSimAnnealer
• trajectory_file_name_ : core::pack::annealer::FixbbSimAnnealer
• trans_chi4_mean_ : core::scoring::methods::ProClosureEnergy
• trans_chi4_sd_ : core::scoring::methods::ProClosureEnergy
• TRANS_OMG_LOWER_RANGE : core::pack::dunbrack::RotamericSingleResiduePeptoidLibrary< T, N >
• TRANS_OMG_UPPER_RANGE : core::pack::dunbrack::RotamericSingleResiduePeptoidLibrary< T, N >
• trans_packed_rotno_2_sorted_rotno_ : core::pack::dunbrack::RotamericSingleResiduePeptoidLibrary< T, N >
• trans_rotamers_ : core::pack::dunbrack::RotamericSingleResiduePeptoidLibrary< T, N >
• TRANS_UPPER_CIS_LOWER_SPLIT : core::pack::dunbrack::RotamericSingleResiduePeptoidLibrary< T, N >
• TRANS_X : core::kinematics::Jump
• TRANS_Y : core::kinematics::Jump
• TRANS_Z : core::kinematics::Jump
• TRANSFER : core::conformation::signals::ConnectionEvent
• transfer_constraint_set() : core::pose::Pose
• transform() : core::conformation::UltraLightResidue
• transform_Ax_plus_b_recursive() : core::kinematics::tree::Atom , core::kinematics::tree::Atom_
• translate() : core::grid::CartGrid< T >
• translation : core::kinematics::RT
• translation_along_axis() : core::kinematics::Jump
• translation_matrices_ : core::conformation::symmetry::SymmData
• tree_edge() : core::chemical::RerootRestypeVisitor
• tree_from_jumps_and_cuts() : core::kinematics::FoldTree
• treeatom_map_ : core::chemical::RerootRestypeVisitor
• TreeVizBuilder() : core::kinematics::TreeVizBuilder
• trie() : core::scoring::trie::TrieCollection
• trie_ : core::scoring::trie::RotamerTrie< AT, CPDATA >
• trie_vs_path() : core::scoring::etable::AnalyticEtableEvaluator , core::scoring::etable::TableLookupEvaluator , core::scoring::trie::RotamerTrie< AT, CPDATA > , core::scoring::trie::RotamerTrieBase
• trie_vs_trie() : core::scoring::etable::AnalyticEtableEvaluator , core::scoring::etable::TableLookupEvaluator , core::scoring::trie::RotamerTrie< AT, CPDATA > , core::scoring::trie::RotamerTrieBase
• TrieCountPair1BC3() : core::scoring::etable::etrie::TrieCountPair1BC3
• TrieCountPair1BC4() : core::scoring::etable::etrie::TrieCountPair1BC4
• TrieCountPairAll() : core::scoring::etable::etrie::TrieCountPairAll
• TrieCountPairGeneric() : core::scoring::etable::etrie::TrieCountPairGeneric
• TrieNode() : core::scoring::trie::TrieNode< AT, CPDATA >
• tries_ : core::scoring::trie::TrieCollection
• trilinear_gradient() : core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• trilinear_interpolation() : core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• trim_subbin_edges_and_rescale_subbin() : core::scoring::bin_transitions::BinTransitionData
• trimFiberDiffractionData() : core::scoring::fiber_diffraction::FiberDiffraction
• trimmedArea : core::scoring::sc::_RESULTS
• TrimPeripheralBand() : core::scoring::sc::ShapeComplementarityCalculator
• TrimPeripheralBandCheckDot() : core::scoring::sc::ShapeComplementarityCalculator
• TrueResidueSelector() : core::pack::task::residue_selector::TrueResidueSelector
• truncate_cenlist_values() : core::scoring::EnvPairPotential
• trySeveral_ciBRs() : core::pack::annealer::FASTERAnnealer
• TS1_PSEUDOCONTACT_SHIFT_DATA : core::pose::datacache::CacheableDataType
• TS2_PSEUDOCONTACT_SHIFT_DATA : core::pose::datacache::CacheableDataType
• TS3_PSEUDOCONTACT_SHIFT_DATA : core::pose::datacache::CacheableDataType
• TS4_PSEUDOCONTACT_SHIFT_DATA : core::pose::datacache::CacheableDataType
• Tsymm_ : core::conformation::symmetry::SymmetricConformation
• TVector : core::fragment::VectorCacheUnit< T >
• twelveA_ : core::scoring::TwelveANeighborGraph
• twelveA_neighbor_graph() : core::scoring::Energies
• twelveA_squared_ : core::scoring::TwelveANeighborGraph
• TwelveANeighborEdge() : core::scoring::TwelveANeighborEdge
• TwelveANeighborGraph() : core::scoring::TwelveANeighborGraph
• TwelveANeighborNode() : core::scoring::TwelveANeighborNode
• twin_law_ : core::scoring::cryst::PhenixInterface
• Two : core::chemical::gasteiger::GasteigerAtomTypeData
• TWO_B_MethodIterator : core::scoring::ScoreFunction
• TWO_B_Methods : core::scoring::ScoreFunction
• two_body_energies_ : core::pack::interaction_graph::DensePDEdge , core::pack::interaction_graph::DoubleDensePDEdge , core::pack::interaction_graph::DoubleLazyEdge , core::pack::interaction_graph::FASTEREdge , core::pack::interaction_graph::LazyEdge , core::pack::interaction_graph::PDEdge
• twobody_enmeths_ : core::scoring::MinimizationEdge , core::scoring::MinimizationNode
• TwoBodyEnergies : core::scoring::MinimizationEdge , core::scoring::MinimizationNode
• TwoBodyEnergiesIterator : core::scoring::MinimizationEdge , core::scoring::MinimizationNode
• TwoBodyEnergy() : core::scoring::methods::TwoBodyEnergy
• twoD_histogram_ : core::scoring::orbitals::OrbitalsStatistics
• tX_ : core::grid::CartGrid< T >
• tY_ : core::grid::CartGrid< T >
• type() : core::chemical::ICoorAtomID
• Type : core::chemical::ICoorAtomID
• type() : core::chemical::ResidueLoaderOptions , core::conformation::Atom , core::conformation::orbitals::OrbitalXYZCoords , core::conformation::Residue , core::conformation::symmetry::SymmDataOptions , core::fragment::BBTorsionAndAnglesSRFD , core::fragment::BBTorsionSRFD , core::fragment::DownJumpSRFD , core::fragment::Frame , core::fragment::JumpingFrame , core::fragment::SecstructSRFD , core::fragment::SingleResidueFragData , core::fragment::UpJumpSRFD , core::id::DOF_ID , core::id::TorsionID , core::import_pose::ImportPoseOptions , core::io::pdb::Field , core::io::pdb::FileDataOptions , core::io::pdb::PDB_DReaderOptions , core::io::raw_data::DisulfideFile::ResNum , core::io::silent::SilentFileOptions , core::optimization::DOF_Node , core::pack::dunbrack::DunbrackConstraint , core::pack::dunbrack::RotamerConstraint , core::scoring::constraints::AmbiguousConstraint , core::scoring::constraints::AmbiguousNMRConstraint , core::scoring::constraints::AmbiguousNMRDistanceConstraint , core::scoring::constraints::AngleConstraint , core::scoring::constraints::AtomPairConstraint , core::scoring::constraints::BackboneStubConstraint , core::scoring::constraints::BackboneStubLinearConstraint , core::scoring::constraints::BigBinConstraint , core::scoring::constraints::BoundFunc , core::scoring::constraints::ConstantConstraint , core::scoring::constraints::Constraint , core::scoring::constraints::CoordinateConstraint , core::scoring::constraints::DihedralConstraint , core::scoring::constraints::DihedralPairConstraint , core::scoring::constraints::DistancePairConstraint , core::scoring::constraints::FabConstraint , core::scoring::constraints::KofNConstraint , core::scoring::constraints::LocalCoordinateConstraint , core::scoring::constraints::MultiConstraint , core::scoring::constraints::SequenceProfileConstraint , core::scoring::constraints::SiteConstraint , core::scoring::constraints::SiteConstraintResidues , core::scoring::DC , core::scoring::electron_density::ElectronDensityOptions , core::scoring::fiber_diffraction::FiberDiffractionOptions , core::scoring::motif::MotifHash , core::scoring::motif::ResPairMotif , core::scoring::packstat::SimplePDB_Atom , core::scoring::RDC , core::scoring::RDC_Rohl , core::scoring::rna::data::RNA_Reactivity , core::scoring::sc::_DOT , core::sequence::CompositeSequence , core::sequence::ScoringScheme , core::sequence::Sequence , core::sequence::SequenceCoupling , core::sequence::SequenceProfile
• type1() : core::scoring::motif::MotifHash , core::scoring::motif::ResPairMotif
• type1_id_ : core::scoring::constraints::NamedAtomPairConstraint
• type2() : core::scoring::motif::MotifHash , core::scoring::motif::ResPairMotif
• type2_id_ : core::scoring::constraints::NamedAtomPairConstraint
• type_ : core::chemical::ICoorAtomID , core::conformation::Atom , core::conformation::orbitals::OrbitalXYZCoords , core::conformation::symmetry::SymmetryInfo , core::id::DOF_ID , core::id::TorsionID , core::scoring::constraints::BoundFunc , core::scoring::DC , core::scoring::methods::UnfoldedStateEnergy , core::scoring::motif::MotifHash , core::scoring::motif::ResPairMotif , core::scoring::RDC , core::scoring::RDC_Rohl , core::scoring::rna::data::RNA_Reactivity , core::sequence::Cell , core::sequence::ScoringScheme
• type_for_fake_atoms() : core::chemical::gasteiger::GasteigerAtomTypeSet
• type_map_ : core::scoring::packstat::AtomRadiusMap
• TypeDifference : core::chemical::gasteiger::GasteigerAtomTypeData
• types() : core::chemical::Patch
• types_ : core::chemical::Patch
• tZ_ : core::grid::CartGrid< T >