Here is a list of all class members with links to the classes they belong to:

- v -

• v : core::kinematics::Stub , core::optimization::EItem
• V : core::scoring::electron_density::ElectronDensity
• V2000 : core::chemical::sdf::MolWriter
• V3000 : core::chemical::sdf::MolWriter
• v_ : core::optimization::Particle
• v_max_ : core::optimization::ParticleSwarmMinimizer
• valence_electrons_p() : core::chemical::ElectronConfiguration
• valence_electrons_s() : core::chemical::ElectronConfiguration
• valence_electrons_sp() : core::chemical::ElectronConfiguration
• valence_electrons_sp_ : core::chemical::ElectronConfiguration
• valence_electrons_spd() : core::chemical::ElectronConfiguration
• valence_electrons_spd_ : core::chemical::ElectronConfiguration
• valence_quantum_number_ : core::chemical::ElectronConfiguration
• valid : core::fragment::picking_old::concepts::Extent< PageIterator > , core::graph::ArrayPoolElement< T > , core::graph::EdgeListConstIterator , core::graph::EdgeListIterator , core::id::AtomID , core::id::DOF_ID , core::id::JumpID , core::id::NamedAtomID , core::id::NamedStubID , core::id::StubID , core::id::TorsionID , core::kinematics::Edge , core::scoring::DimerPairing , core::scoring::sc::_RESULTS
• valid_ : core::fragment::FragData , core::scoring::DimerPairing
• valid_ends() : core::scoring::dssp::StrandPairing
• validate_dunbrack_binary() : core::pack::dunbrack::RotamerLibrary
• validate_input() : core::sequence::Aligner
• vall_ : core::fragment::picking_old::FragmentLibraryManager
• VallFragmentEval() : core::fragment::picking_old::vall::eval::VallFragmentEval , core::fragment::picking_old::vall::VallLibrarian
• VallFragmentEvalCOP : core::fragment::picking_old::vall::VallLibrarian
• VallFragmentEvalOP : core::fragment::picking_old::vall::VallLibrarian
• VallFragmentEvalOPs : core::fragment::picking_old::vall::VallLibrarian
• VallFragmentGen() : core::fragment::picking_old::vall::gen::VallFragmentGen
• VallFragmentGenCOP : core::fragment::picking_old::vall::VallLibrarian
• VallFragmentGenOP : core::fragment::picking_old::vall::VallLibrarian
• VallFragmentGenOPs : core::fragment::picking_old::vall::VallLibrarian
• VallFragmentScore : core::fragment::picking_old::vall::eval::ABEGOEval , core::fragment::picking_old::vall::eval::EnergyEval , core::fragment::picking_old::vall::eval::IdentityEval , core::fragment::picking_old::vall::eval::VallFragmentEval , core::fragment::picking_old::vall::scores::VallFragmentScore , core::fragment::picking_old::vall::VallLibrarian
• VallLibrarian() : core::fragment::picking_old::vall::VallLibrarian
• VallResidue() : core::fragment::picking_old::vall::VallResidue
• VallResidueConstIterator : core::fragment::picking_old::vall::eval::ABEGOEval , core::fragment::picking_old::vall::eval::EnergyEval , core::fragment::picking_old::vall::eval::IdentityEval , core::fragment::picking_old::vall::eval::VallFragmentEval , core::fragment::picking_old::vall::scores::VallFragmentScore , core::fragment::picking_old::vall::VallLibrarian , core::fragment::picking_old::vall::VallSection
• VallResidueIterator : core::fragment::picking_old::vall::gen::LengthGen , core::fragment::picking_old::vall::gen::SecStructGen , core::fragment::picking_old::vall::gen::VallFragmentGen , core::fragment::picking_old::vall::VallLibrarian , core::fragment::picking_old::vall::VallSection
• VallSectionConstIterator : core::fragment::picking_old::vall::VallLibrarian , core::fragment::picking_old::vall::VallLibrary
• VallSectionIterator : core::fragment::picking_old::vall::VallLibrarian , core::fragment::picking_old::vall::VallLibrary
• Value : core::id::AtomID_Map< T > , core::id::DOF_ID_Map< T > , core::id::NamedAtomID_Map< T >
• value : core::io::pdb::Field , core::io::silent::SilentEnergy , core::pose::RemarkInfo , core::scoring::hbonds::FadeInterval , core::scoring::rna::data::RNA_Reactivity
• value_ : core::io::silent::SilentEnergy , core::scoring::rna::data::RNA_Reactivity
• value_deriv() : core::scoring::hbonds::FadeInterval
• value_type : core::id::AtomID_Map< T > , core::id::DOF_ID_Map< T > , core::id::NamedAtomID_Map< T > , core::import_pose::atom_tree_diffs::ScoreLessThanComparator , core::io::silent::SilentFileData::const_iterator , core::io::silent::SilentFileData::iterator , core::pack::interaction_graph::AminoAcidNeighborSparseMatrix< T >
• values_for_aa() : core::sequence::MatrixScoringScheme
• ValueType : core::fragment::FragCache< T > , core::fragment::FragStore< T >
• variant_type_status_ : core::chemical::ResidueProperties
• variant_types() : core::pose::MiniPose
• variant_types_list() : core::pose::MiniPose
• variant_types_list_ : core::pose::MiniPose
• variants_ : core::chemical::Selector_MATCH_VARIANTS , core::chemical::Selector_VARIANT_TYPE
• vd_ : core::chemical::ICoorAtomID
• vd_to_index_ : core::chemical::ResidueType
• vdw_ : core::scoring::vdwaals::VDWTrieEvaluator
• vdw_atom_list() : core::scoring::rna::RNA_AtomVDW
• vdw_calculation_annotated_sequence() : core::scoring::rna::RNA_ScoringInfo
• vdw_calculation_annotated_sequence_ : core::scoring::rna::RNA_ScoringInfo
• VDW_Energy() : core::scoring::vdwaals::VDW_Energy
• vdw_scale_factor_ : core::scoring::rna::RNA_VDW_Energy , core::scoring::vdwaals::VDW_Energy
• vdw_suffix_ : core::scoring::AtomVDW
• vdw_weight() : core::scoring::vdwaals::VDWTrieEvaluator
• vdw_weight_ : core::scoring::vdwaals::VDWTrieEvaluator
• VDWaalsRadius : core::chemical::Element
• VdWaalsRadiusCSD : core::chemical::gasteiger::GasteigerAtomTypeData
• VDWAtom() : core::scoring::vdwaals::VDWAtom
• VDWTrieCountPair1B() : core::scoring::vdwaals::VDWTrieCountPair1B
• VDWTrieEvaluator() : core::scoring::vdwaals::VDWTrieEvaluator
• Vec3 : core::scoring::sc::MolecularSurfaceCalculator
• Vector : core::conformation::symmetry::SymmData , core::kinematics::Jump , core::kinematics::RT , core::kinematics::Stub
• vector_angle_cut() : core::pack::task::residue_selector::InterGroupInterfaceByVectorSelector
• vector_angle_cut_ : core::pack::task::residue_selector::InterGroupInterfaceByVectorSelector
• vector_dist_cut() : core::pack::task::residue_selector::InterGroupInterfaceByVectorSelector
• vector_dist_cut_ : core::pack::task::residue_selector::InterGroupInterfaceByVectorSelector
• Vectors : core::scoring::methods::LK_BallEnergy , core::scoring::methods::LKB_ResidueInfo
• verbose_ : core::io::silent::SilentFileData , core::scoring::carbon_hbonds::CarbonHBondEnergy , core::scoring::dna::DNATorsionEnergy , core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy , core::scoring::geometric_solvation::GeometricSolEnergyEvaluator , core::scoring::geometric_solvation::OccludedHbondSolEnergy , core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody , core::scoring::membrane::FaMPSolvEnergy , core::scoring::methods::Fa_MbsolvEnergy , core::scoring::methods::LK_PolarNonPolarEnergy , core::scoring::rna::chemical_shift::RNA_ChemicalShiftPotential , core::scoring::rna::RNA_LJ_BaseEnergy , core::scoring::rna::RNA_Mg_Energy , core::scoring::rna::RNA_TorsionPotential , core::scoring::rna::StackElecEnergy
• verify_bb_bins() : core::pack::dunbrack::RotamericSingleResidueDunbrackLibrary< T, N >
• verify_chain_setup() : core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator
• verify_omgphipsi_bins() : core::pack::dunbrack::RotamericSingleResiduePeptoidLibrary< T, N >
• verify_parameters_() : core::scoring::func::MixtureFunc
• verify_patch_areas_correct() : core::pack::interaction_graph::SurfaceNode< V, E, G >
• verify_phipsi_bins() : core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary , core::pack::dunbrack::RotamericSingleResidueDunbrackLibrary< T, N >
• version() : core::io::rna::RDAT , core::pack::dunbrack::cenrot::CenRotDunEnergy , core::pack::dunbrack::DunbrackEnergy , core::pack::interaction_graph::HPatchEnergy , core::pack::interaction_graph::SurfaceEnergy , core::scoring::carbon_hbonds::CarbonHBondEnergy , core::scoring::constraints::ConstraintsEnergy , core::scoring::cryst::XtalMLEnergy , core::scoring::custom_pair_distance::FullatomCustomPairDistanceEnergy , core::scoring::disulfides::CentroidDisulfideEnergy , core::scoring::disulfides::DisulfideMatchingEnergy , core::scoring::disulfides::FullatomDisulfideEnergy , core::scoring::dna::DNAChiEnergy , core::scoring::dna::DNATorsionEnergy , core::scoring::elec::FA_ElecEnergy , core::scoring::elec::FA_ElecEnergyAroAll , core::scoring::elec::FA_ElecEnergyAroAro , core::scoring::elec::FA_GrpElecEnergy , core::scoring::elec::RNA_FA_ElecEnergy , core::scoring::electron_density::ElecDensAllAtomCenEnergy , core::scoring::electron_density::ElecDensCenEnergy , core::scoring::electron_density::ElecDensEnergy , core::scoring::electron_density::FastDensEnergy , core::scoring::electron_density::PattersonCorrEnergy , core::scoring::electron_density_atomwise::ElecDensAtomwiseEnergy , core::scoring::etable::AnalyticEtableEnergy , core::scoring::etable::TableLookupEtableEnergy , core::scoring::fiber_diffraction::FiberDiffractionEnergy , core::scoring::fiber_diffraction::FiberDiffractionEnergyDens , core::scoring::geometric_solvation::ContextDependentGeometricSolEnergy , core::scoring::geometric_solvation::ContextIndependentGeometricSolEnergy , core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy , core::scoring::geometric_solvation::OccludedHbondSolEnergy , core::scoring::geometric_solvation::OccludedHbondSolEnergy_onebody , core::scoring::hackaro::HackAroEnergy , core::scoring::hbonds::HBondEnergy , core::scoring::interface_::DDPscore , core::scoring::loop_graph::LoopCloseEnergy , core::scoring::membrane::FaMPEnvEnergy , core::scoring::membrane::FaMPEnvSmoothEnergy , core::scoring::membrane::FaMPSolvEnergy , core::scoring::membrane::MPCbetaEnergy , core::scoring::membrane::MPEnvEnergy , core::scoring::membrane::MPLipoEnergy , core::scoring::membrane::MPNonHelixPenalty , core::scoring::membrane::MPPairEnergy , core::scoring::membrane::MPTerminiPenalty , core::scoring::membrane::MPTMProjPenalty , core::scoring::methods::BurialEnergy , core::scoring::methods::CartesianBondedEnergy , core::scoring::methods::CenHBEnergy , core::scoring::methods::CenPairEnergy , core::scoring::methods::CenRotEnvEnergy , core::scoring::methods::CenRotPairEnergy , core::scoring::methods::ChainbreakEnergy , core::scoring::methods::ChemicalShiftAnisotropyEnergy , core::scoring::methods::ContactOrderEnergy , core::scoring::methods::CustomAtomPairEnergy , core::scoring::methods::D2H_SA_Energy , core::scoring::methods::dfire::DFIRE_Energy , core::scoring::methods::DipolarCouplingEnergy , core::scoring::methods::DirectReadoutEnergy , core::scoring::methods::DistanceChainbreakEnergy , core::scoring::methods::DNA_BaseEnergy , core::scoring::methods::EnergyMethod , core::scoring::methods::EnvEnergy , core::scoring::methods::EnvSmoothEnergy , core::scoring::methods::Fa_MbenvEnergy , core::scoring::methods::Fa_MbsolvEnergy , core::scoring::methods::FACTSEnergy , core::scoring::methods::FreeDOF_Energy , core::scoring::methods::GaussianOverlapEnergy , core::scoring::methods::GenBornEnergy , core::scoring::methods::GoapEnergy , core::scoring::methods::HybridVDW_Energy , core::scoring::methods::IntermolEnergy , core::scoring::methods::LinearChainbreakEnergy , core::scoring::methods::LK_BallEnergy , core::scoring::methods::LK_hack , core::scoring::methods::LK_PolarNonPolarEnergy , core::scoring::methods::MembraneCbetaEnergy , core::scoring::methods::MembraneCenPairEnergy , core::scoring::methods::MembraneEnvEnergy , core::scoring::methods::MembraneEnvPenalties , core::scoring::methods::MembraneEnvSmoothEnergy , core::scoring::methods::MembraneLipo , core::scoring::methods::MissingEnergy , core::scoring::methods::MMBondAngleEnergy , core::scoring::methods::MMBondLengthEnergy , core::scoring::methods::MMLJEnergyInter , core::scoring::methods::MMLJEnergyIntra , core::scoring::methods::MMTorsionEnergy , core::scoring::methods::NMerPSSMEnergy , core::scoring::methods::NMerRefEnergy , core::scoring::methods::NMerSVMEnergy , core::scoring::methods::OmegaTetherEnergy , core::scoring::methods::OtherPoseEnergy , core::scoring::methods::P_AA_Energy , core::scoring::methods::P_AA_pp_Energy , core::scoring::methods::PackStatEnergy , core::scoring::methods::PairEnergy , core::scoring::methods::PeptideBondEnergy , core::scoring::methods::pHEnergy , core::scoring::methods::PoissonBoltzmannEnergy , core::scoring::methods::ProClosureEnergy , core::scoring::methods::ProQ_Energy , core::scoring::methods::Rama2BOffsetEnergy , core::scoring::methods::RamachandranEnergy2B , core::scoring::methods::RamachandranEnergy , core::scoring::methods::ReferenceEnergy , core::scoring::methods::ReferenceEnergyNoncanonical , core::scoring::methods::ResidualDipolarCouplingEnergy , core::scoring::methods::ResidualDipolarCouplingEnergy_Rohl , core::scoring::methods::RG_Energy_Fast , core::scoring::methods::RMS_Energy , core::scoring::methods::SA_Energy , core::scoring::methods::SecondaryStructureEnergy , core::scoring::methods::SequenceDependentRefEnergy , core::scoring::methods::SmoothCenPairEnergy , core::scoring::methods::SmoothEnvEnergy , core::scoring::methods::SuckerEnergy , core::scoring::methods::SymmetricLigandEnergy , core::scoring::methods::UnfoldedStateEnergy , core::scoring::methods::WaterAdductHBondEnergy , core::scoring::methods::WaterAdductIntraEnergy , core::scoring::methods::YHHPlanarityEnergy , core::scoring::nv::NVscore , core::scoring::orbitals::OrbitalsScore , core::scoring::packing::HolesEnergy , core::scoring::packing::HolesEnergyRes , core::scoring::packing::SurfEnergy , core::scoring::packing::SurfVolEnergy , core::scoring::rna::chemical_shift::RNA_ChemicalShiftEnergy , core::scoring::rna::data::RNA_ChemicalMappingEnergy , core::scoring::rna::data::RNA_DataBackboneEnergy , core::scoring::rna::RG_Energy_RNA , core::scoring::rna::RNA_BulgeEnergy , core::scoring::rna::RNA_FullAtomStackingEnergy , core::scoring::rna::RNA_FullAtomVDW_BasePhosphate , core::scoring::rna::RNA_JR_SuiteEnergy , core::scoring::rna::RNA_LJ_BaseEnergy , core::scoring::rna::RNA_Mg_Energy , core::scoring::rna::RNA_PairwiseLowResolutionEnergy , core::scoring::rna::RNA_SugarCloseEnergy , core::scoring::rna::RNA_SuiteEnergy , core::scoring::rna::RNA_TorsionEnergy , core::scoring::rna::RNA_VDW_Energy , core::scoring::rna::StackElecEnergy , core::scoring::saxs::FastSAXSEnergy , core::scoring::saxs::SAXSEnergy , core::scoring::saxs::SAXSEnergyCreatorCEN , core::scoring::saxs::SAXSEnergyCreatorFA , core::scoring::sym_e::symEnergy , core::scoring::vdwaals::VDW_Energy , core::SVNVersion
• version_ : core::chemical::ResidueDatabaseIO , core::io::rna::RDAT , core::SVNVersion
• vertex() : core::chemical::ICoorAtomID , core::chemical::ResidueConnection
• vertex1() : core::chemical::orbitals::ICoorOrbitalData
• vertex1_ : core::chemical::orbitals::ICoorOrbitalData
• vertex2() : core::chemical::orbitals::ICoorOrbitalData
• vertex2_ : core::chemical::orbitals::ICoorOrbitalData
• vertex3() : core::chemical::orbitals::ICoorOrbitalData
• vertex3_ : core::chemical::orbitals::ICoorOrbitalData
• vertex_ : core::chemical::ResidueConnection
• vertex_already_reached() : core::pack::interaction_graph::InteractionGraphBase
• VertexClass : core::graph::UEEdge< V, E > , core::graph::UEVertex< V, E > , core::graph::UpperEdgeGraph< V, E >
• VertexVector : core::graph::UpperEdgeGraph< V, E >
• vertices_ : core::graph::UpperEdgeGraph< V, E >
• viols() : core::scoring::func::CountViolFunc , core::scoring::func::SkipViolFunc
• virt_id_to_subunit_chain_ : core::conformation::symmetry::SymmData
• virt_id_to_subunit_num_ : core::conformation::symmetry::SymmData
• virt_id_to_subunit_residue_ : core::conformation::symmetry::SymmData
• virt_id_to_virt_num_ : core::conformation::symmetry::SymmData
• virt_num_to_virt_id_ : core::conformation::symmetry::SymmData
• virtual_coordinates_ : core::conformation::symmetry::SymmData
• virtual_cyclic_oxygen_index() : core::chemical::carbohydrates::CarbohydrateInfo
• virtual_cyclic_oxygen_index_ : core::chemical::carbohydrates::CarbohydrateInfo
• VirtualCoordinate() : core::conformation::symmetry::VirtualCoordinate
• visit() : core::conformation::AddEdgeVisitor< Vertex, Edge > , core::environment::FoldTreeSketch
• visited() : core::environment::FoldTreeSketch::Node
• vol : core::scoring::packing::SurfVol , core::scoring::packing::SurfVolDeriv , core::scoring::packstat::CavityBall
• volume() : core::scoring::FACTSRsdTypeInfo , core::scoring::packstat::CavityBallCluster
• volume_ : core::scoring::FACTSRsdTypeInfo
• voxel_volume() : core::scoring::electron_density::ElectronDensity