Here is a list of all class members with links to the classes they belong to:
- u -
- ub()
: core::scoring::constraints::BoundFunc
- ub_
: core::kinematics::TreeVizBuilder
, core::scoring::constraints::BoundFunc
- UEEdge()
: core::graph::UEEdge< V, E >
- UEEdge< V, E >
: core::graph::UEVertex< V, E >
, core::graph::UpperEdgeGraph< V, E >
- UEVertex()
: core::graph::UEVertex< V, E >
- UEVertex< V, E >
: core::graph::UpperEdgeGraph< V, E >
- UltraLightResidue()
: core::conformation::UltraLightResidue
- unblock_signals()
: core::conformation::Conformation
- UnboundRotamersOperation()
: core::pack::rotamer_set::UnboundRotamersOperation
- unf_state_
: core::scoring::ScoringManager
- unf_state_potential_
: core::scoring::methods::UnfoldedStateEnergy
- unfolded_energies_type()
: core::scoring::methods::EnergyMethodOptions
- unfolded_energies_type_
: core::scoring::methods::EnergyMethodOptions
- unfolded_energy_
: core::scoring::UnfoldedStatePotential
- unfolded_potential_file_weights_
: core::scoring::UnfoldedStatePotential
- UnfoldedStateEnergy()
: core::scoring::methods::UnfoldedStateEnergy
- UnfoldedStatePotential()
: core::scoring::UnfoldedStatePotential
- ungapped_length()
: core::sequence::Sequence
- ungapped_sequence()
: core::sequence::Sequence
- Unhybridized
: core::chemical::gasteiger::GasteigerAtomTypeData
- uniform_mainchain_torsions()
: core::scoring::bin_transitions::BinTransitionCalculator
- uniform_phipsi_from_allowed_rama()
: core::scoring::Ramachandran
- unimplemented_method_error()
: core::scoring::constraints::Constraint
, core::sequence::ScoringScheme
- uninitialized_energy
: core::pack::annealer::MultiCoolAnnealer
- unique_ref_poses_
: core::import_pose::atom_tree_diffs::AtomTreeDiff
- unknown_num
: core::io::raw_data::DisulfideFile
- unpaired_valence_electrons_sp()
: core::chemical::ElectronConfiguration
- unrecognized_atoms_
: core::pose::PDBInfo
- unrecognized_res_num2name_
: core::pose::PDBInfo
- unrecognized_res_size_
: core::pose::PDBInfo
- UnrecognizedAtomRecord()
: core::pose::UnrecognizedAtomRecord
- unvisit()
: core::environment::FoldTreeSketch::Node
- unweighted_score_coeff
: core::scoring::electron_density_atomwise::ElectronDensityAtomwise
- up_to_date_
: core::io::raw_data::DisulfideFile
- update()
: core::scoring::disulfides::CentroidDisulfideEnergyContainer
, core::scoring::disulfides::DisulfideMatchingEnergyContainer
, core::scoring::disulfides::FullatomDisulfideEnergyContainer
, core::scoring::loop_graph::LoopGraph
, core::scoring::rna::RNA_CentroidInfo
, core::scoring::TMscoreStore
- update_actcoord()
: core::chemical::ResidueType
, core::conformation::Conformation
, core::conformation::Residue
, core::pose::Pose
- update_actcoords()
: core::conformation::Conformation
, core::pose::Pose
- update_active_enmeths_for_residue()
: core::scoring::MinimizationNode
- update_alt_state_exphphobes()
: core::pack::interaction_graph::HPatchBackgroundNode< V, E, G >
, core::pack::interaction_graph::HPatchNode< V, E, G >
- update_alternate_one_body_energy()
: core::pack::interaction_graph::SimpleNode
- update_atom_ids_from_atom_pointer()
: core::kinematics::AtomTree
- update_atom_information_based_on_occupancy()
: core::io::pdb::FileData
- update_atom_tree()
: core::pack::scmin::ResidueAtomTreeCollection
- update_bg_edge_vector()
: core::pack::interaction_graph::FirstClassNode< V, E, G >
- update_calc_chem_shift_list()
: core::scoring::rna::chemical_shift::RNA_ChemicalShiftPotential
- update_centers()
: core::pose::rna::RNA_SuiteName
- update_child_torsions()
: core::kinematics::tree::Atom
, core::kinematics::tree::Atom_
- update_commutative()
: core::pack::task::PackerTask
, core::pack::task::PackerTask_
, core::pack::task::ResidueLevelTask_
- update_component_energies()
: core::scoring::Energies
- update_conformation()
: core::conformation::UltraLightResidue
- update_connections_to_other_residue()
: core::conformation::Residue
- update_connections_to_residues()
: core::conformation::Residue
- update_contiguous_monomers()
: core::conformation::symmetry::SymmetryInfo
- update_current_energy()
: core::pack::interaction_graph::SimpleEdge
- update_current_one_body_energy()
: core::pack::interaction_graph::SimpleNode
- update_cutpoints()
: core::kinematics::FoldTree
- update_derived_data()
: core::chemical::ResidueType
- update_derived_rna_data()
: core::chemical::rna::RNA_ResidueType
- update_disjoint_sets_using_cache()
: core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
- update_domain_map()
: core::conformation::Conformation
, core::kinematics::AtomTree
, core::kinematics::tree::Atom
, core::kinematics::tree::Atom_
- update_domainmap_for_lr_energy_container()
: core::scoring::Energies
- update_edge_label()
: core::kinematics::FoldTree
- update_edge_labels()
: core::kinematics::FoldTree
- update_edge_paired()
: core::scoring::rna::data::RNA_DMS_LowResolutionPotential
- update_edge_vector()
: core::pack::interaction_graph::BackgroundNode< V, E, G >
, core::pack::interaction_graph::NodeBase
- update_energies_after_passive_change()
: core::pack::interaction_graph::SimpleNode
- update_enumeration_shell()
: core::scoring::FACTSPoseInfo
- update_from_momento()
: core::pack::scmin::ResidueAtomTreeCollection
- update_from_pose()
: core::scoring::ContextGraph
, core::scoring::TenANeighborGraph
, core::scoring::TwelveANeighborGraph
- update_from_wide_nblist()
: core::scoring::NeighborList
- update_hbevaltype()
: core::scoring::hbonds::HBEvalTuple
- update_indices()
: core::scoring::BB_Pos
- update_internal_coords()
: core::kinematics::AtomTree
, core::kinematics::tree::Atom
, core::kinematics::tree::Atom_
, core::kinematics::tree::BondedAtom
, core::kinematics::tree::JumpAtom
- update_internal_energy_sums()
: core::pack::interaction_graph::DensePDNode
, core::pack::interaction_graph::DoubleDensePDNode
, core::pack::interaction_graph::DoubleLazyNode
, core::pack::interaction_graph::FASTERNode
, core::pack::interaction_graph::LazyNode
, core::pack::interaction_graph::LinearMemNode
, core::pack::interaction_graph::PDNode
, core::pack::interaction_graph::SymmLinearMemNode
, core::pack::interaction_graph::SymmMinimalistNode
- update_internal_energy_totals()
: core::pack::interaction_graph::DensePDInteractionGraph
, core::pack::interaction_graph::DoubleDensePDInteractionGraph
, core::pack::interaction_graph::DoubleLazyInteractionGraph
, core::pack::interaction_graph::FASTERInteractionGraph
, core::pack::interaction_graph::LazyInteractionGraph
, core::pack::interaction_graph::LinearMemoryInteractionGraph
, core::pack::interaction_graph::PDInteractionGraph
, core::pack::interaction_graph::SymmLinearMemoryInteractionGraph
, core::pack::interaction_graph::SymmMinimalistInteractionGraph
- update_internal_energy_totals_hpatch()
: core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
- update_internal_energy_totals_surface()
: core::pack::interaction_graph::SurfaceInteractionGraph< V, E, G >
- update_internal_vectors()
: core::pack::interaction_graph::DensePDNode
, core::pack::interaction_graph::DoubleDensePDNode
, core::pack::interaction_graph::DoubleLazyNode
, core::pack::interaction_graph::FASTERNode
, core::pack::interaction_graph::LazyNode
, core::pack::interaction_graph::LinearMemNode
, core::pack::interaction_graph::PDNode
, core::pack::interaction_graph::SymmLinearMemNode
, core::pack::interaction_graph::SymmMinimalistNode
- update_intersection()
: core::pack::task::ResidueLevelTask_
- update_intrares_energy_status()
: core::scoring::ScoreFunction
- update_jump_edge()
: core::kinematics::FoldTree
- update_jump_points()
: core::kinematics::FoldTree
- update_last_controlling_chi()
: core::chemical::ResidueType
- update_loop_atoms_and_lengths()
: core::scoring::loop_graph::LoopCloseEnergy
- update_loops()
: core::scoring::loop_graph::LoopGraph
- update_loops_and_cycles()
: core::scoring::loop_graph::LoopGraph
- update_membrane_position()
: core::conformation::Conformation
- update_n_to_be_packed()
: core::pack::task::PackerTask_
- update_neighbor_links()
: core::scoring::Energies
, core::scoring::symmetry::SymmetricEnergies
- update_neighbor_mass_sum()
: core::scoring::TenANeighborNode
- update_nmonomer_jumps()
: core::conformation::symmetry::SymmetryInfo
- update_noncanonical_connection()
: core::conformation::Conformation
- update_nres()
: core::kinematics::FoldTree
- update_num_jump()
: core::kinematics::FoldTree
- update_offset_data()
: core::pack::rotamer_set::RotamerSets
, core::pack::rotamer_set::RotamerSubsets
- update_one_body_energies()
: core::pack::interaction_graph::DensePDNode
, core::pack::interaction_graph::DoubleDensePDNode
, core::pack::interaction_graph::FASTERNode
, core::pack::interaction_graph::InteractionGraphBase
, core::pack::interaction_graph::PDNode
- update_one_body_energy()
: core::pack::interaction_graph::DensePDNode
, core::pack::interaction_graph::DoubleDensePDNode
, core::pack::interaction_graph::FASTERNode
, core::pack::interaction_graph::NodeBase
, core::pack::interaction_graph::OnTheFlyNode
, core::pack::interaction_graph::PDNode
, core::pack::interaction_graph::SymmOnTheFlyNode
- update_orbital_coords()
: core::conformation::Conformation
, core::conformation::Residue
, core::pose::Pose
- update_polymeric_connection()
: core::conformation::Conformation
- update_pose_and_cst_set_from_cst_string()
: core::pose::full_model_info::FullModelParameters
- update_pose_chains_from_pdb_chains()
: core::pose::Pose
- update_proposed_energy()
: core::pack::interaction_graph::SimpleEdge
- update_recent_history()
: core::pack::interaction_graph::LinearMemNode
, core::pack::interaction_graph::SymmLinearMemNode
- update_residue()
: core::pack::scmin::ResidueAtomTreeCollection
- update_residue_commutative()
: core::pack::task::PackerTask_
- update_residue_connection_mapping()
: core::chemical::ResidueType
- update_residue_coordinates()
: core::conformation::Conformation
- update_residue_for_packing()
: core::scoring::elec::FA_ElecEnergy
, core::scoring::elec::FA_ElecEnergyAroAll
, core::scoring::elec::FA_ElecEnergyAroAro
, core::scoring::elec::FA_GrpElecEnergy
, core::scoring::elec::RNA_FA_ElecEnergy
, core::scoring::electron_density::PattersonCorrEnergy
, core::scoring::etable::BaseEtableEnergy< Derived >
, core::scoring::FACTSPotential
, core::scoring::GenBornPotential
, core::scoring::hbonds::HBondEnergy
, core::scoring::methods::CustomAtomPairEnergy
, core::scoring::methods::EnergyMethod
, core::scoring::methods::FACTSEnergy
, core::scoring::methods::GenBornEnergy
, core::scoring::methods::LK_BallEnergy
, core::scoring::methods::MMLJEnergyInter
, core::scoring::methods::PairEnergy
, core::scoring::orbitals::OrbitalsScore
, core::scoring::ScoreFunction
- update_residue_intersection()
: core::pack::task::PackerTask_
- update_residue_links()
: core::conformation::parametric::ParametersSet
- update_residue_maps()
: core::chemical::ResidueTypeSet
- update_residue_neighbors()
: core::pose::Pose
, core::scoring::Energies
- update_residue_torsions()
: core::conformation::Conformation
- update_residue_union()
: core::pack::task::PackerTask_
- update_rna_base_base_interactions()
: core::scoring::rna::RNA_LowResolutionPotential
- update_rna_base_pair_list()
: core::scoring::rna::RNA_LowResolutionPotential
- update_rna_centroid_info()
: core::scoring::rna::RNA_LowResolutionPotential
- update_rotamer_offsets()
: core::pack::rotamer_set::RotamerSet_
, core::pack::rotamer_set::RotamerSubset
- update_score()
: core::io::silent::SilentStruct
- update_score_multiply_factor()
: core::conformation::symmetry::SymmetryInfo
- update_sequence_numbering()
: core::conformation::Conformation
, core::conformation::Residue
, core::id::AtomID_Map< T >
, core::id::NamedAtomID_Map< T >
, core::kinematics::AtomTree
- update_state_at_neighbor()
: core::pack::interaction_graph::HPatchBackgroundEdge< V, E, G >
, core::pack::interaction_graph::HPatchEdge< V, E, G >
- update_state_for_neighbors_substitution()
: core::pack::interaction_graph::HPatchNode< V, E, G >
- update_state_for_substitution()
: core::pack::interaction_graph::HPatchBackgroundNode< V, E, G >
- update_stub()
: core::kinematics::tree::Atom
, core::kinematics::tree::BondedAtom
, core::kinematics::tree::JumpAtom
- update_union()
: core::pack::task::ResidueLevelTask_
- update_virtual_base_if_necessary()
: core::scoring::rna::data::RNA_DMS_Potential
- update_xyz_coords()
: core::kinematics::AtomTree
, core::kinematics::tree::Atom
, core::kinematics::tree::Atom_
, core::kinematics::tree::BondedAtom
, core::kinematics::tree::JumpAtom
- updateCachedDensity()
: core::scoring::electron_density::ElectronDensity
- updateFcalc()
: core::scoring::cryst::PhenixInterface
- updateSolventMask()
: core::scoring::cryst::PhenixInterface
- UpJumpSRFD()
: core::fragment::UpJumpSRFD
- upper
: core::chemical::sdf::BondData
- upper_atom_neighbors()
: core::scoring::NeighborList
- upper_bound()
: core::scoring::func::SOGFunc_Impl
, core::scoring::PoissonBoltzmannPotential
- upper_bound_
: core::scoring::func::SOGFunc_Impl
, core::scoring::nv::NVscore
, core::scoring::PoissonBoltzmannPotential
- upper_bound_dy_
: core::scoring::func::SplineFunc
- upper_bound_score()
: core::scoring::func::SOGFunc_Impl
- upper_bound_squared_
: core::scoring::nv::NVscore
- upper_bound_x_
: core::scoring::func::SplineFunc
- upper_bound_y_
: core::scoring::func::SplineFunc
- upper_connect()
: core::chemical::ResidueType
, core::conformation::Residue
- upper_connect_angle_params()
: core::scoring::methods::ResidueCartBondedParameters
- upper_connect_angle_params_
: core::scoring::methods::ResidueCartBondedParameters
- upper_connect_atom()
: core::chemical::ResidueType
, core::conformation::Residue
- upper_connect_id()
: core::chemical::ResidueType
- upper_connect_id_
: core::chemical::ResidueType
- upper_edge_list_begin()
: core::graph::Node
, core::graph::UEVertex< V, E >
- upper_edge_list_end()
: core::graph::Node
, core::graph::UEVertex< V, E >
- upper_edges_
: core::graph::UEVertex< V, E >
- upper_lower_
: core::chemical::SetPolymerConnectAtom
- upper_nblist_
: core::scoring::NeighborList
- upper_neighbor_id()
: core::scoring::constraints::CstResNeighbConstIterator
, core::scoring::constraints::CstResNeighbIterator
, core::scoring::DenseNeighborConstIterator
, core::scoring::DenseNeighborIterator
, core::scoring::disulfides::CentroidDisulfideEnergyContainer
, core::scoring::disulfides::CentroidDisulfideNeighborConstIterator
, core::scoring::disulfides::CentroidDisulfideNeighborIterator
, core::scoring::disulfides::DisulfideMatchingEnergyContainer
, core::scoring::disulfides::DisulfideMatchingNeighborConstIterator
, core::scoring::disulfides::DisulfideMatchingNeighborIterator
, core::scoring::disulfides::DisulfResNeighbConstIterator
, core::scoring::disulfides::DisulfResNeighbIterator
, core::scoring::disulfides::FullatomDisulfideEnergyContainer
, core::scoring::OneToAllNeighborConstIterator
, core::scoring::OneToAllNeighborIterator
, core::scoring::PeptideBondedNeighborConstIterator
, core::scoring::PeptideBondedNeighborIterator
, core::scoring::ResidueNeighborConstIterator
, core::scoring::ResidueNeighborIterator
- upper_neighbor_iterator_begin()
: core::scoring::constraints::CstEnergyContainer
, core::scoring::DenseEnergyContainer
, core::scoring::disulfides::CentroidDisulfideEnergyContainer
, core::scoring::disulfides::DisulfideMatchingEnergyContainer
, core::scoring::disulfides::FullatomDisulfideEnergyContainer
, core::scoring::LREnergyContainer
, core::scoring::OneToAllEnergyContainer
, core::scoring::PeptideBondedEnergyContainer
- upper_neighbor_iterator_end()
: core::scoring::constraints::CstEnergyContainer
, core::scoring::DenseEnergyContainer
, core::scoring::disulfides::CentroidDisulfideEnergyContainer
, core::scoring::disulfides::DisulfideMatchingEnergyContainer
, core::scoring::disulfides::FullatomDisulfideEnergyContainer
, core::scoring::LREnergyContainer
, core::scoring::OneToAllEnergyContainer
, core::scoring::PeptideBondedEnergyContainer
- upper_range_dof_jumps1_
: core::conformation::symmetry::SymDof
- upper_range_dof_jumps2_
: core::conformation::symmetry::SymDof
- upper_vertex()
: core::graph::UEEdge< V, E >
- upper_vertex_
: core::graph::UEEdge< V, E >
- upper_vertex_index_
: core::graph::UEEdge< V, E >
- UpperEdgeGraph()
: core::graph::UpperEdgeGraph< V, E >
- UpperEdgeGraph< V, E >
: core::graph::UEEdge< V, E >
, core::graph::UEVertex< V, E >
- UpperEdgeListConstIter
: core::graph::UEVertex< V, E >
, core::graph::UpperEdgeGraph< V, E >
- UpperEdgeListIter
: core::graph::UEVertex< V, E >
, core::graph::UpperEdgeGraph< V, E >
- UpperEdgeVector
: core::graph::UEVertex< V, E >
- upstream_atom()
: core::kinematics::Edge
, core::kinematics::FoldTree
- upstream_combine()
: core::id::SequenceMapping
- upstream_jump_residue()
: core::kinematics::FoldTree
- upstream_jump_stub()
: core::conformation::Conformation
- upstream_stub_atoms_
: core::fragment::DownJumpSRFD
- ur()
: core::conformation::PseudoBond
- ur_conn_
: core::conformation::PseudoBond
- ur_conn_id()
: core::conformation::PseudoBond
- ur_resconnid()
: core::conformation::PseudoBond
- url()
: core::SVNVersion
- url_
: core::SVNVersion
- use_2prime_OH_potential_
: core::scoring::rna::RNA_TorsionPotential
- use_altorigin
: core::scoring::electron_density::ElectronDensity
- use_bicubic_interpolation
: core::init::pre_talaris_2013_behavior_settings
- use_big_polar_H_
: core::scoring::sasa::SasaMethod
- use_charge
: core::scoring::APBSConfig::I_PARAM
- use_diel
: core::scoring::APBSConfig::I_PARAM
- use_extended_intrares_energy_interface()
: core::scoring::constraints::ConstraintsEnergy
, core::scoring::etable::BaseEtableEnergy< Derived >
, core::scoring::methods::TwoBodyEnergy
- use_extended_residue_energy_interface()
: core::scoring::methods::OneBodyEnergy
- use_extended_residue_pair_energy_interface()
: core::scoring::constraints::ConstraintsEnergy
, core::scoring::custom_pair_distance::FullatomCustomPairDistanceEnergy
, core::scoring::disulfides::FullatomDisulfideEnergy
, core::scoring::elec::FA_ElecEnergy
, core::scoring::elec::FA_GrpElecEnergy
, core::scoring::elec::RNA_FA_ElecEnergy
, core::scoring::etable::BaseEtableEnergy< Derived >
, core::scoring::geometric_solvation::ContextDependentGeometricSolEnergy
, core::scoring::geometric_solvation::ContextIndependentGeometricSolEnergy
, core::scoring::hbonds::HBondEnergy
, core::scoring::methods::LK_BallEnergy
, core::scoring::methods::LK_PolarNonPolarEnergy
, core::scoring::methods::TwoBodyEnergy
, core::scoring::rna::StackElecEnergy
- use_focus_selector_
: core::pack::task::residue_selector::NeighborhoodResidueSelector
- use_hb_env_dep()
: core::scoring::hbonds::HBondOptions
- use_hb_env_dep_
: core::scoring::hbonds::HBondOptions
- use_hb_env_dep_DNA()
: core::scoring::hbonds::HBondOptions
- use_hb_env_dep_DNA_
: core::scoring::hbonds::HBondOptions
- use_incorrect_deriv()
: core::scoring::hbonds::HBondDatabase
- use_intra_dna_cp_crossover_4_
: core::scoring::methods::LK_BallEnergy
- use_kappa
: core::scoring::APBSConfig::I_PARAM
- use_log_score_
: core::scoring::func::GaussianFunc
- use_multicool_annealer()
: core::pack::task::operation::OptH
- use_multicool_annealer_
: core::pack::task::operation::OptH
- use_nblist()
: core::optimization::MinimizerOptions
, core::scoring::Energies
- use_nblist_
: core::optimization::MinimizerOptions
, core::scoring::Energies
- use_nblist_auto_update()
: core::scoring::Energies
- use_nblist_auto_update_
: core::scoring::Energies
- use_ncaa_rotlib_
: core::chemical::ResidueType
- use_new_potential_
: core::scoring::rna::RNA_TorsionPotential
- use_orientation_dep_rna_ch_o_bonds()
: core::scoring::carbon_hbonds::CarbonHBondEnergy
- use_peptoid_rotlib_
: core::chemical::ResidueType
- use_phenix_sugar_close_
: core::scoring::rna::RNA_SugarCloseEnergy
- use_phipsi_dep_
: core::scoring::OmegaTether
- use_pot
: core::scoring::APBSConfig::I_PARAM
- use_pssm_features()
: core::scoring::methods::NMerSVMEnergy
- use_pssm_features_
: core::scoring::methods::NMerSVMEnergy
- use_residue_type_theta0()
: core::scoring::mm::MMBondAngleResidueTypeParamSet
- use_residue_type_theta0_
: core::scoring::mm::MMBondAngleResidueTypeParamSet
- use_sp2_chi_penalty()
: core::scoring::hbonds::HBondOptions
- use_sp2_chi_penalty_
: core::scoring::hbonds::HBondOptions
- use_symmetry_
: core::conformation::symmetry::SymmetryInfo
- useres1()
: core::scoring::motif::ResPairMotifQuery
- useres1_
: core::scoring::motif::ResPairMotifQuery
- useres1_ph()
: core::scoring::motif::ResPairMotifQuery
- useres1_ph_
: core::scoring::motif::ResPairMotifQuery
- useres1_po()
: core::scoring::motif::ResPairMotifQuery
- useres1_po_
: core::scoring::motif::ResPairMotifQuery
- useres2()
: core::scoring::motif::ResPairMotifQuery
- useres2_
: core::scoring::motif::ResPairMotifQuery
- useres2_ph()
: core::scoring::motif::ResPairMotifQuery
- useres2_ph_
: core::scoring::motif::ResPairMotifQuery
- useres2_po()
: core::scoring::motif::ResPairMotifQuery
- useres2_po_
: core::scoring::motif::ResPairMotifQuery
- using_extended_method_
: core::scoring::geometric_solvation::ContextDependentGeometricSolEnergy
, core::scoring::geometric_solvation::ContextIndependentGeometricSolEnergy
, core::scoring::rna::StackElecEnergy
- USOGFunc()
: core::scoring::func::USOGFunc
- utility::SingletonBase< ChemicalManager >
: core::chemical::ChemicalManager
- utility::SingletonBase< ConstraintFactory >
: core::scoring::constraints::ConstraintFactory
- utility::SingletonBase< ConstraintIO >
: core::scoring::constraints::ConstraintIO
- utility::SingletonBase< FragmentLibraryManager >
: core::fragment::picking_old::FragmentLibraryManager
- utility::SingletonBase< GridInfo >
: core::scoring::geometric_solvation::GridInfo
- utility::SingletonBase< ResLvlTaskOperationFactory >
: core::pack::task::operation::ResLvlTaskOperationFactory
- utility::SingletonBase< RotamerDotsRadiusData >
: core::pack::interaction_graph::RotamerDotsRadiusData
- utility::SingletonBase< RotamerLibrary >
: core::pack::dunbrack::RotamerLibrary
- utility::SingletonBase< ScoringManager >
: core::scoring::ScoringManager
- utility::SingletonBase< SequenceFactory >
: core::sequence::SequenceFactory
- utility::SingletonBase< SilentStructFactory >
: core::io::silent::SilentStructFactory
- utility::SingletonBase< SinXOverX >
: core::scoring::saxs::SinXOverX
- utility::SingletonBase< StructureStoreManager >
: core::indexed_structure_store::StructureStoreManager
- utility::SingletonBase< SurfacePotential >
: core::pack::interaction_graph::SurfacePotential
- utility::SingletonBase< WaterWeightGridSet >
: core::scoring::geometric_solvation::WaterWeightGridSet