util.cc File Reference

#include <protocols/docking/util.hh>
#include <protocols/scoring/InterfaceInfo.hh>
#include <protocols/rigid/RB_geometry.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/database/sql_utils.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/conformation/Conformation.hh>
#include <core/types.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <utility/vector1.hh>
#include <utility/sql_database/DatabaseSessionManager.hh>
#include <utility/string_util.hh>
#include <cppdb/frontend.h>
#include <map>
#include <sstream>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::docking

Functions
static thread_local basic::Tracer	TR ("protocols.docking.util")
	Construct a foldtree from a description of the chains involved in the interface. More...
void	protocols::docking::setup_foldtree (Pose &pose, string const &partner_chainID, DockJumps &movable_jumps)
	Setup foldtree for across an interface specified by a string for the partner chains (using pdb_chain identification). The foldtree is set up such that the jump points are at the center of masses of the two partners. More...
void	protocols::docking::setup_foldtree (core::pose::Pose const &pose, std::string const &partner_chainID, DockJumps &movable_jumps, core::kinematics::FoldTree &ft)
void	protocols::docking::setup_foldtree (Pose &pose, Size const interface_id, sessionOP db_session, DockJumps &movable_jumps)
void	protocols::docking::setup_foldtree (core::pose::Pose const &pose, core::Size interface_id, utility::sql_database::sessionOP db_session, DockJumps &movable_jumps, core::kinematics::FoldTree &ft)
void	protocols::docking::setup_foldtree (Pose &pose, map< Size, vector1< Size > > const &partner_to_chains, DockJumps &movable_jumps)
void	protocols::docking::setup_foldtree (core::pose::Pose const &pose, std::map< core::Size, utility::vector1< core::Size > > const &partner_to_chains, DockJumps &movable_jumps, core::kinematics::FoldTree &ft)
void	protocols::docking::setup_foldtree (Pose &pose, Size const cutpoint, DockJumps &movable_jumps)
void	protocols::docking::setup_foldtree (core::pose::Pose const &pose, core::Size cutpoint, DockJumps &movable_jumps, core::kinematics::FoldTree &ft)

Function Documentation

static thread_local basic::Tracer TR ( "protocols.docking.util"  )

static

Construct a foldtree from a description of the chains involved in the interface.

Author

Brian Weitzner

Matthew O'Meara