PerturbByBins.cc File Reference

This mover takes a stretch of backbone and perturbs its mainchain torsions based on the probabilities of transitions from one torsion bin to another. More...

#include <protocols/simple_moves/bin_transitions/PerturbByBins.hh>
#include <protocols/simple_moves/bin_transitions/PerturbByBinsCreator.hh>
#include <core/scoring/bin_transitions/BinTransitionCalculator.hh>
#include <core/scoring/bin_transitions/BinTransitionData.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/AA.hh>
#include <core/id/TorsionID.hh>
#include <core/id/types.hh>
#include <utility/tag/Tag.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/filters/Filter.fwd.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <numeric/random/random.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::simple_moves
	protocols::simple_moves::bin_transitions

Functions
static thread_local basic::Tracer	protocols::simple_moves::bin_transitions::TR ("protocols.simple_moves.bin_transitions.PerturbByBins")

Detailed Description

This mover takes a stretch of backbone and perturbs its mainchain torsions based on the probabilities of transitions from one torsion bin to another.

Bin transitions are read from database files. The algorithm is: set the first residue based on the probability of a residue being in a bin. Set subsequent residues based on the probability of a residue being in a bin given that the previous residue is in a particular bin.

Author

Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu)