JumpSetup.hh File Reference

read jump-definition file setups fold tree an chainbreak variants loop code didn't work because fold-tree to complicated ( overlapping loops ) More...

#include <protocols/jumping/JumpSetup.fwd.hh>
#include <protocols/jumping/JumpSample.hh>
#include <core/types.hh>
#include <core/kinematics/ShortestPathInFoldTree.fwd.hh>
#include <core/kinematics/MoveMap.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/fragment/FrameList.fwd.hh>
#include <core/fragment/FragSet.fwd.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <basic/Tracer.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <cstdlib>
#include <string>
#include <utility/vector1.hh>

Classes
class	protocols::jumping::Interval
	two numbers, i.e., jump start end residue, or cut-regions... More...
class	protocols::jumping::BaseJumpSetup
	virtual base class: can create a set of jumps and cuts More...
class	protocols::jumping::JumpSetup
class	protocols::jumping::JumpSetup::JumpDef
class	protocols::jumping::JumpsFromAllPairings
class	protocols::jumping::JumpSelector
class	protocols::jumping::JumpSelector::JumpWeightDef

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::jumping

Functions
static thread_local basic::Tracer	hh_tr ("protocols.jumping", basic::t_info)
std::ostream &	protocols::jumping::operator<< (std::ostream &os, JumpSample const &t)
	output operator More...

Detailed Description

read jump-definition file setups fold tree an chainbreak variants loop code didn't work because fold-tree to complicated ( overlapping loops )

Detailed:

Author

Oliver Lange

Function Documentation

static thread_local basic::Tracer hh_tr ( "protocols.jumping"  , basic::t_info    )

static

Referenced by protocols::jumping::JumpSetup::clean_jumps(), and protocols::jumping::JumpSelector::clean_jumps().