util.cc File Reference

#include <protocols/stepwise/monte_carlo/util.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/align/util.hh>
#include <protocols/stepwise/modeler/protein/InputStreamWithResidueInfo.hh>
#include <protocols/stepwise/monte_carlo/StepWiseMonteCarlo.hh>
#include <protocols/stepwise/monte_carlo/options/StepWiseMonteCarloOptions.hh>
#include <protocols/stepwise/monte_carlo/mover/AddOrDeleteMover.hh>
#include <core/types.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/util.hh>
#include <core/pose/full_model_info/util.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/util.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/format.hh>
#include <basic/Tracer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::monte_carlo

Functions
static thread_local basic::Tracer	TR ("protocols.stepwise.monte_carlo.util")
void	protocols::stepwise::monte_carlo::output_to_silent_file (std::string const &out_tag, std::string const &silent_file, pose::Pose &pose, pose::PoseCOP native_pose, bool const superimpose_over_all_instantiated, bool const do_rms_fill_calculation)
core::io::silent::SilentStructOP	protocols::stepwise::monte_carlo::prepare_silent_struct (std::string const &out_tag, pose::Pose &pose, pose::PoseCOP native_pose, bool const superimpose_over_all_instantiated, bool const do_rms_fill_calculation, core::pose::PoseOP full_model_pose)
void	protocols::stepwise::monte_carlo::output_to_silent_file (std::string const &out_tag, std::string const &silent_file, pose::Pose const &pose)
void	protocols::stepwise::monte_carlo::output_to_silent_file (std::string const &silent_file, utility::vector1< pose::PoseOP > &pose_list, pose::PoseCOP native_pose)
void	protocols::stepwise::monte_carlo::build_full_model (pose::Pose const &start_pose, Pose &full_model_pose)
core::pose::PoseOP	protocols::stepwise::monte_carlo::build_full_model (pose::Pose const &start_pose)
void	protocols::stepwise::monte_carlo::filter_out_bulge_res (utility::vector1< Size > &sample_res, utility::vector1< Size > const &bulge_res)

Detailed Description

Detailed:

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Function Documentation

static thread_local basic::Tracer TR ( "protocols.stepwise.monte_carlo.util"  )

static

Referenced by protocols::stepwise::monte_carlo::prepare_silent_struct().