loophash_util.cc File Reference

#include <protocols/sic_dock/util.hh>
#include <protocols/sic_dock/loophash_util.hh>
#include <protocols/sic_dock/RigidScore.hh>
#include <protocols/sic_dock/SICFast.hh>
#include <core/pose/util.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/HomogeneousTransform.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/ResidueFactory.hh>
#include <basic/Tracer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::sic_dock

Typedefs
typedef core::Real	protocols::sic_dock::Real
typedef core::Size	protocols::sic_dock::Size
typedef core::pose::Pose	protocols::sic_dock::Pose
typedef Xform	protocols::sic_dock::Xform
typedef utility::vector1< Vec >	protocols::sic_dock::Vecs
typedef utility::vector1< Real >	protocols::sic_dock::Reals
typedef utility::vector1< Size >	protocols::sic_dock::Sizes
typedef numeric::Xforms	protocols::sic_dock::Xforms
typedef utility::vector1 < RigidScoreCOP >	protocols::sic_dock::Scores

Functions
static thread_local basic::Tracer	TR ("protocols.sic_dock.loophash_util")
Vec3	protocols::sic_dock::get_leap_lower_stub (core::pose::Pose const &pose, Size ir)
Vec3	protocols::sic_dock::get_leap_upper_stub (core::pose::Pose const &pose, Size ir)
Xform	protocols::sic_dock::vec3_to_stub (Vec3 const &v3)
Xform	protocols::sic_dock::vec3_to_stub (Xform const &xform, Vec3 const &v3)
void	protocols::sic_dock::get_termini_from_pose (core::pose::Pose const &pose, Size ir, TermInfo &lowers, TermInfo &uppers)
void	protocols::sic_dock::get_termini_from_pose (core::pose::Pose const &pose, TermInfo &lowers, TermInfo &uppers)
numeric::geometry::hashing::Real6	protocols::sic_dock::get_leap_6dof (Xform const &lower, Xform const &upper)
Size	protocols::sic_dock::count_linkers (Xform const &lower, Xform const &upper, protocols::loophash::LoopHashLibraryOP loop_hash_library, Sizes const &loopsizes, core::Size radius)
core::Size	protocols::sic_dock::dump_loophash_linkers (Xform const &lower, Xform const &upper, protocols::loophash::LoopHashLibraryOP loop_hash_library, Sizes const &loopsizes, Size radius, std::string const &outtag)
Real	protocols::sic_dock::linker_count2score (Size count)

Function Documentation

static thread_local basic::Tracer TR ( "protocols.sic_dock.loophash_util"  )

static