FragmentCandidate.cc File Reference

Something that might become a fragment if its scores will be good enough. More...

#include <core/types.hh>
#include <protocols/frag_picker/FragmentCandidate.hh>
#include <protocols/frag_picker/VallChunk.hh>
#include <protocols/frag_picker/VallProvider.hh>
#include <ObjexxFCL/string.functions.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/frags.OptionKeys.gen.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/fragment/util.hh>
#include <core/pose/util.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/Conformation.hh>
#include <core/scoring/rms_util.hh>
#include <numeric/model_quality/rms.hh>
#include <protocols/relax/FastRelax.hh>
#include <protocols/relax/RelaxProtocolBase.hh>
#include <protocols/relax/util.hh>
#include <protocols/simple_filters/RmsdEvaluator.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <utility/io/izstream.hh>
#include <utility/exit.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::frag_picker

Functions
static thread_local basic::Tracer	protocols::frag_picker::trFragmentCandidate ("protocols.frag_picker.FragmentCandidate")
utility::vector1 < FragmentCandidateOP >	protocols::frag_picker::read_fragment_candidates (std::string file_name, VallProviderOP chunk_owner, Size max_nfrags_per_pos)

Detailed Description

Something that might become a fragment if its scores will be good enough.

Author

Dominik Gront (dgron.nosp@m.t@ch.nosp@m.em.uw.nosp@m..edu.nosp@m..pl)