frag_picker Directory Reference

Directory dependency graph for frag_picker:

Directories
directory	nonlocal
directory	quota
directory	scores

Files
file	BestTotalScoreSelector.cc
	provides a selector that picks best fragments based on their total score
file	BestTotalScoreSelector.fwd.hh
file	BestTotalScoreSelector.hh
	provides a selector that picks best fragments based on their total score
file	BoundedCollector.fwd.hh
file	BoundedCollector.hh
file	CandidatesCollector.fwd.hh
	Forward declaration for CandidatesCollector.
file	CandidatesCollector.hh
	Pure virtual base class for a container holding fragment candidates.
file	CommonFragmentComparators.fwd.hh
	provides a few ways to compare fragment candidates (forward definitions)
file	CommonFragmentComparators.hh
	provides a few ways to compare fragment candidates
file	CompositeFragmentSelector.cc
	provides a selector that picks best fragments based on their total score
file	CompositeFragmentSelector.hh
	provides a selector that picks best fragments based on their total score
file	Contact.fwd.hh
	forward declaration for a Contact
file	Contact.hh
	A contact.
file	ContactCounts.fwd.hh
	forward declaration for a ContactCounts
file	ContactCounts.hh
	Contact counts.
file	ContactTypes.cc
	fragment picker contact types
file	ContactTypes.hh
	fragment picker type declarations
file	CS2ndShift.cc
file	CS2ndShift.hh
	Class that converts Talos object into secondary shifts list.
file	CSTalosIO.cc
file	CSTalosIO.hh
	Class that reads and writes chemical shifts in TALOS format.
file	CustomScoreSelector.cc
	provides a selector that picks best fragments based on their total score
file	CustomScoreSelector.fwd.hh
file	CustomScoreSelector.hh
	provides a selector that picks best fragments based on their total score
file	DiversifyCrmsdByClustering.cc
	provides a selector that picks fragments diferent enough from the fragments that have been already picked
file	DiversifyCrmsdByClustering.hh
	provides a selector that picks fragments diversified by crmsd (by means of hierarchical clustering)
file	DiversifyCrmsdSelector.cc
	provides a selector that picks fragments diferent enough from the fragments that have been already picked
file	DiversifyCrmsdSelector.hh
	provides a selector that picks best fragments based on their total score
file	DiversifyDihedralsSelector.cc
	provides a selector that picks fragments diferent enough from the fragments that have been already picked
file	DiversifyDihedralsSelector.hh
	provides a selector that picks best fragments based on their total score
file	Faraggi_SA.cc
	Faraggi maximum SA values from Faraggi et al. Proteins 2008.
file	Faraggi_SA.hh
	Faraggi maximum SA values from Faraggi et al. Proteins 2008.
file	FragmentCandidate.cc
	Something that might become a fragment if its scores will be good enough.
file	FragmentCandidate.fwd.hh
file	FragmentCandidate.hh
	Something that might become a fragment if its scores will be good enough.
file	FragmentComparatorBase.fwd.hh
	provides a few ways to compare fragment candidates (forward definitions)
file	FragmentComparatorBase.hh
	defines a base class for all fragment comparators
file	FragmentPicker.cc
	Fragment picker - the core part of picking machinery.
file	FragmentPicker.fwd.hh
	Fragment picker - forward declaration.
file	FragmentPicker.hh
	Fragment picker - the core part of picking machinery.
file	FragmentSelectingRule.fwd.hh
file	FragmentSelectingRule.hh
	provides a selector that picks best fragments based on their total score
file	GrabAllCollector.hh
file	JCouplingIO.cc
file	JCouplingIO.hh
	Class that reads and writes chemical shifts in TALOS format.
file	LAMBEGO_IO.cc
file	LAMBEGO_IO.hh
	reader for a probability distribution over A,B,E,G,O torsion bins.
file	LazySortedVector1.hh
file	PdbIdChunkFilter.cc
	defines two basic chunk filters based on pdb id
file	PdbIdChunkFilter.fwd.hh
	defines two basic chunk filters based on pdb id
file	PdbIdChunkFilter.hh
	defines two basic chunk filters based on pdb id
file	PhiPsiTalosIO.cc
file	PhiPsiTalosIO.hh
	Class that reads and writes Phi-Psi in TALOS format.
file	SidechainContactDistCutoff.cc
	Defines sidechain contact distance cutoffs.
file	SidechainContactDistCutoff.fwd.hh
file	SidechainContactDistCutoff.hh
	Defines sidechain contact distance cutoffs.
file	TorsionBinIO.cc
file	TorsionBinIO.hh
	reader for a probability distribution over A,B,E,G,O torsion bins.
file	VallChunk.cc
	a contiguous chunk of residues taken from a vall.
file	VallChunk.fwd.hh
	forward declaration for VallChunk
file	VallChunk.hh
	a contiguous chunk of residues taken from a vall.
file	VallChunkFilter.fwd.hh
	forward declaration for VallChunkFilter
file	VallChunkFilter.hh
	says whether a given chunk is interesting or not
file	VallProvider.cc
	reads a vall library and serves the data in chunks
file	VallProvider.fwd.hh
	forward declaration for VallProvider
file	VallProvider.hh
	reads a vall library and serves the data in chunks
file	VallResidue.cc
	class for managing a line of the Vall fragment library
file	VallResidue.fwd.hh
	forward declaration for core::fragment::picking::vall:VallResidue
file	VallResidue.hh
	class for managing a line of the Vall fragment library