utility.cc File Reference

#include <protocols/flxbb/utility.hh>
#include <protocols/jd2/parser/BluePrint.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/flxbb.OptionKeys.gen.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/SS_Info.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/AngleConstraint.hh>
#include <core/scoring/constraints/BoundConstraint.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/func/ScalarWeightedFunc.hh>
#include <protocols/fldsgn/topology/StrandPairing.hh>
#include <protocols/fldsgn/topology/SS_Info2.hh>
#include <numeric/xyzVector.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::flxbb

Macros
#define	INCLUDED_protocols_flxbb_utility_HH

Typedefs
typedef core::Size	protocols::flxbb::Size
typedef core::Real	protocols::flxbb::Real
typedef std::string	protocols::flxbb::String
typedef core::pose::Pose	protocols::flxbb::Pose
typedef protocols::jd2::parser::BluePrintOP	protocols::flxbb::BluePrintOP
typedef core::scoring::constraints::ConstraintOPs	protocols::flxbb::ConstraintOPs

Functions
static thread_local basic::Tracer	TR ("protocols.flxbb.FlxbbDesign.utility")
	Numeric headers. More...
ConstraintOPs	protocols::flxbb::constraints_sheet (Pose const &pose, BluePrintOP const &blue, Real const coef, Real const condist=5.5)
	constrain hydrogen bonds in beta sheet ( not used ) More...
ConstraintOPs	protocols::flxbb::constraints_NtoC (Pose const &pose, Real const coef, Real const condist=11.0)
	constraint between N- and C-terminal Ca atoms More...
ConstraintOPs	protocols::flxbb::constraints_sheet (Pose const &pose, Real const coef, Real const condist=5.5)
	constrain between Ca atoms in beta sheet More...
utility::vector1< Size >	protocols::flxbb::find_ligands (Pose const &pose)
	Looks for unknown amino acids in the pose and returns their indices. More...

Detailed Description

Author

Nobuyasu Koga (nobuy.nosp@m.asua.nosp@m.@uw.e.nosp@m.du)

Macro Definition Documentation

#define INCLUDED_protocols_flxbb_utility_HH

Function Documentation

static thread_local basic::Tracer TR ( "protocols.flxbb.FlxbbDesign.utility"  )

static

Numeric headers.