ligand_docking Directory Reference

Directory dependency graph for ligand_docking:

Directories
directory	ligand_options
directory	rdf

Files
file	AddHydrogen.cc
	Lemmon
file	AddHydrogen.fwd.hh
file	AddHydrogen.hh
file	AddHydrogens.cc
	Lemmon
file	AddHydrogens.fwd.hh
file	AddHydrogens.hh
file	AddHydrogensCreator.hh
	This class will create instances of Mover AddHydrogens for the MoverFactory.
file	AtomCountFilter.cc
	Find packing defects at an interface using packstat score terms.
file	AtomCountFilter.hh
	Find packing defects at an interface using packstat score terms.
file	AtomCountFilterCreator.hh
	FilterCreator for the AtomCountFilter.
file	ChainExistsFilter.cc
	Find packing defects at an interface using packstat score terms.
file	ChainExistsFilter.hh
	Find packing defects at an interface using packstat score terms.
file	ChainExistsFilterCreator.hh
	FilterCreator for the ChainExistsFilter.
file	CompleteConnectionsFilter.cc
	Find packing defects at an interface using packstat score terms.
file	CompleteConnectionsFilter.hh
	Find packing defects at an interface using packstat score terms.
file	CompleteConnectionsFilterCreator.hh
	FilterCreator for the CompleteConnectionsFilter.
file	CompoundTranslate.cc
file	CompoundTranslate.hh
file	CompoundTranslateCreator.hh
	This class will create instances of Mover CompoundTranslateCreator for the MoverFactory.
file	ComputeLigandRDF.cc
	A mover for computing RDF functions.
file	ComputeLigandRDF.fwd.hh
file	ComputeLigandRDF.hh
	header file for ComputeLigandRDF mover
file	ComputeLigandRDFCreator.hh
file	DistributionMap.cc
	enumerate some distributions and map them to strings
file	DistributionMap.hh
	enumerate some distributions and map them to strings
file	FinalMinimizer.cc
	implementation of resfile reader and its command classes
file	FinalMinimizer.fwd.hh
file	FinalMinimizer.hh
	header of classes for resfile options
file	FinalMinimizerCreator.hh
	This class will create instances of Mover FinalMinimizerCreator for the MoverFactory.
file	grid_functions.cc
file	grid_functions.hh
file	GrowLigand.cc
	Lemmon
file	GrowLigand.fwd.hh
file	GrowLigand.hh
file	GrowLigandCreator.hh
	This class will create instances of Mover GrowLigand for the MoverFactory.
file	HBondAcceptorFilter.cc
	Find packing defects at an interface using packstat score terms.
file	HBondAcceptorFilter.hh
	Find packing defects at an interface using packstat score terms.
file	HBondAcceptorFilterCreator.hh
	FilterCreator for the HBondAcceptorFilter.
file	HBondDonorFilter.cc
	Find packing defects at an interface using packstat score terms.
file	HBondDonorFilter.hh
	Find packing defects at an interface using packstat score terms.
file	HBondDonorFilterCreator.hh
	FilterCreator for the HBondDonorFilter.
file	HeavyAtomFilter.cc
	Find packing defects at an interface using packstat score terms.
file	HeavyAtomFilter.hh
	Find packing defects at an interface using packstat score terms.
file	HeavyAtomFilterCreator.hh
	FilterCreator for the HeavyAtomFilter.
file	HighResDocker.cc
	implementation of resfile reader and its command classes
file	HighResDocker.fwd.hh
file	HighResDocker.hh
	header of classes for resfile options
file	HighResDockerCreator.hh
	This class will create instances of Mover HighResDockerCreator for the MoverFactory.
file	InterfaceBuilder.cc
	implementation of resfile reader and its command classes
file	InterfaceBuilder.fwd.hh
	Makes an interface.
file	InterfaceBuilder.hh
	header of classes for resfile options
file	InterfaceScoreCalculator.cc
file	InterfaceScoreCalculator.fwd.hh
file	InterfaceScoreCalculator.hh
file	InterfaceScoreCalculatorCreator.hh
	This class will create instances of Mover InterfaceScoreCalculator for the MoverFactory.
file	ligand_dock_impl.cc
file	ligand_dock_impl.hh
file	ligand_functions.cc
file	ligand_functions.hh
file	ligand_scores.cc
	Lemmon
file	ligand_scores.hh
file	LigandArea.cc
	implementation of resfile reader and its command classes
file	LigandArea.fwd.hh
	Makes an interface.
file	LigandArea.hh
	header of classes for resfile options
file	LigandBaseProtocol.cc
file	LigandBaseProtocol.hh
file	LigandDesign.cc
	Lemmon
file	LigandDesign.fwd.hh
file	LigandDesign.hh
file	LigandDesignCreator.hh
	This class will create instances of Mover LigandDesign for the MoverFactory.
file	LigandDockingLoaderCreators.hh
	Creator classes for the ligand docking DataLoader classes: InterfaceBuilderLoader and MoveMapBuilderLoader.
file	LigandDockingLoaders.cc
	Implementation of the InterfaceBuilderLoader and MoveMapBuilderLoader classes.
file	LigandDockingLoaders.hh
	Declartion of the InterfaceBuilderLoader and MoveMapBuilderLoader classes for adding named InterfaceBuilders and MoveMapBuilders into the parser's basic::datacache::DataMap.
file	LigandDockProtocol.cc
file	LigandDockProtocol.fwd.hh
file	LigandDockProtocol.hh
file	MinimizeBackbone.cc
	implementation of resfile reader and its command classes
file	MinimizeBackbone.fwd.hh
file	MinimizeBackbone.hh
	header of classes for resfile options
file	MinimizeBackboneCreator.hh
	This class will create instances of Mover MinimizeBackboneCreator for the MoverFactory.
file	MinimizeLigand.cc
	implementation of resfile reader and its command classes
file	MinimizeLigand.fwd.hh
file	MinimizeLigand.hh
	header of classes for resfile options
file	MolarMassFilter.cc
	Find packing defects at an interface using packstat score terms.
file	MolarMassFilter.hh
	Find packing defects at an interface using packstat score terms.
file	MolarMassFilterCreator.hh
	FilterCreator for the MolarMassFilter.
file	MolecularMassFilter.cc
	Find packing defects at an interface using packstat score terms.
file	MolecularMassFilter.hh
	Find packing defects at an interface using packstat score terms.
file	MolecularMassFilterCreator.hh
	FilterCreator for the MolecularMassFilter.
file	MoveMapBuilder.cc
	implementation of resfile reader and its command classes
file	MoveMapBuilder.fwd.hh
file	MoveMapBuilder.hh
	header of classes for resfile options
file	RandomConformerMover.cc
file	RandomConformerMover.fwd.hh
file	RandomConformerMover.hh
file	RandomConformers.cc
	implementation of resfile reader and its command classes
file	RandomConformers.hh
	this class chooses a random conformer for every residue in a specified chain
file	RandomConformersCreator.hh
	This class will create instances of Mover RandomConformersCreator for the MoverFactory.
file	ResidueTorsionRestraints.cc
file	ResidueTorsionRestraints.fwd.hh
file	ResidueTorsionRestraints.hh
file	RigidSearchMover.cc
file	RigidSearchMover.fwd.hh
file	RigidSearchMover.hh
file	Rotate.cc
	implementation of resfile reader and its command classes
file	Rotate.fwd.hh
file	Rotate.hh
	header of classes for resfile options
file	RotateCreator.hh
	This class will create instances of Mover Rotate for the MoverFactory.
file	Rotates.cc
	implementation of resfile reader and its command classes
file	Rotates.fwd.hh
file	Rotates.hh
	header of classes for resfile options
file	RotatesCreator.hh
	This class will create instances of Mover Rotates for the MoverFactory.
file	SlideTogether.cc
	implementation of resfile reader and its command classes
file	SlideTogether.hh
	header of classes for resfile options
file	SlideTogetherCreator.hh
	This class will create instances of Mover SlideTogether for the MoverFactory.
file	StartFrom.cc
	implementation of resfile reader and its command classes
file	StartFrom.fwd.hh
file	StartFrom.hh
	header of classes for resfile options
file	StartFromCreator.hh
	This class will create instances of Mover StartFrom for the MoverFactory.
file	TetherLigand.cc
	implementation of resfile reader and its command classes
file	TetherLigand.fwd.hh
file	TetherLigand.hh
	header of classes for resfile options
file	Transform.cc
file	Transform.fwd.hh
file	Transform.hh
file	TransformCreator.hh
	This class will create instances of Mover Transform for the MoverFactory.
file	Translate.cc
	implementation of resfile reader and its command classes
file	Translate.fwd.hh
file	Translate.hh
	header of classes for resfile options
file	TranslateCreator.hh
	This class will create instances of Mover Translate for the MoverFactory.
file	UnconstrainedTorsionsMover.cc
file	UnconstrainedTorsionsMover.fwd.hh
file	UnconstrainedTorsionsMover.hh
file	WriteLigandMolFile.cc
	Ligand MolFile writer.
file	WriteLigandMolFile.fwd.hh
	forward header class for Ligand MolFile writer
file	WriteLigandMolFile.hh
	header class for Ligand MolFile writer
file	WriteLigandMolFileCreator.hh
	This class will create instances of Mover WriteLigandMolFile for the MoverFactory.