design Directory Reference

Directory dependency graph for design:

Files
file	AntibodyDesignEnum.hh
	Antibody Design enumerators.
file	AntibodyDesignModeler.cc
	Handles modeling of the antibody. Before and after design.
file	AntibodyDesignModeler.fwd.hh
file	AntibodyDesignModeler.hh
	Handles modeling of the antibody. Before, after, and during design.
file	AntibodyDesignMover.cc
	Handles the Antibody Design Protocol.
file	AntibodyDesignMover.fwd.hh
	Handles all loading of CDR, Framework, and cluster/dmap info from database file.
file	AntibodyDesignMover.hh
	Handles the Antibody Design Protocol.
file	AntibodyDesignMoverGenerator.cc
	Handles modeling of the antibody. Before and after design.
file	AntibodyDesignMoverGenerator.fwd.hh
file	AntibodyDesignMoverGenerator.hh
	Handles modeling of the antibody. Before, after, and during design.
file	AntibodyGraftDesignMover.cc
	Class that initially designs antibodies through grafting using an AntibodyDatabase + North_AHO numbering scheme.
file	AntibodyGraftDesignMover.fwd.hh
file	AntibodyGraftDesignMover.hh
	Class that initially designs antibodies through grafting using an AntibodyDatabase + North_AHO numbering scheme.
file	AntibodySeqDesignMover.cc
file	AntibodySeqDesignMover.fwd.hh
file	AntibodySeqDesignMover.hh
	Mover class that designs cdrs using a number of different strategies.
file	AntibodySeqDesignTFCreator.cc
	Class for generating TaskFactories and TaskOperations for antibody design from a set of options.
file	AntibodySeqDesignTFCreator.fwd.hh
file	AntibodySeqDesignTFCreator.hh
	Class for creating a TaskFactory from SeqDesignOptions for use in various protocols.
file	CDRGraftDesignOptions.cc
file	CDRGraftDesignOptions.fwd.hh
file	CDRGraftDesignOptions.hh
	GraftDesign options class and parser.
file	CDRSeqDesignOptions.cc
file	CDRSeqDesignOptions.fwd.hh
file	CDRSeqDesignOptions.hh
	Option control for Sequence Design of a single CDR.
file	ConservativeDesignOperation.cc
	TaskOperation to allow only conservative mutations at designable residues.
file	ConservativeDesignOperation.fwd.hh
file	ConservativeDesignOperation.hh
	TaskOperation to allow only conservative mutations at designable residues.
file	ConservativeDesignOperationCreator.hh
file	ResidueProbDesignOperation.cc
file	ResidueProbDesignOperation.fwd.hh
file	ResidueProbDesignOperation.hh
	Uses a probability distribution to sample allowed residues at a position, adding those types to the packer - only if they are designable.
file	ResidueProbDesignOperationCreator.hh
file	util.cc
file	util.hh
	Utility functions for antibody design namespace.