AntibodyDesignModeler.cc File Reference

Handles modeling of the antibody. Before and after design. More...

#include <protocols/antibody/design/AntibodyDesignModeler.hh>
#include <protocols/antibody/design/util.hh>
#include <protocols/antibody/AntibodyEnum.hh>
#include <protocols/antibody/clusters/CDRClusterEnum.hh>
#include <protocols/antibody/AntibodyInfo.hh>
#include <protocols/antibody/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/ScoreType.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <protocols/relax/FastRelax.hh>
#include <protocols/relax/CentroidRelax.hh>
#include <protocols/relax/RelaxProtocolBase.hh>
#include <protocols/simple_moves/MinMover.hh>
#include <protocols/docking/DockingLowRes.hh>
#include <protocols/docking/DockMCMProtocol.hh>
#include <protocols/docking/util.hh>
#include <protocols/toolbox/task_operations/RestrictToInterface.hh>
#include <protocols/toolbox/task_operations/PreventChainFromRepackingOperation.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/loops/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <utility/file/FileName.hh>
#include <sstream>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody
	protocols::antibody::design

Functions
static thread_local basic::Tracer	TR ("antibody.design.AntibodyDesignModeler")

Detailed Description

Handles modeling of the antibody. Before and after design.

Author

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Function Documentation

static thread_local basic::Tracer TR ( "antibody.design.AntibodyDesignModeler"  )

static