stepwise.cc File Reference

#include <core/types.hh>
#include <core/chemical/util.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/init/init.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/full_model_info/util.hh>
#include <core/pose/util.hh>
#include <core/io/rna/RNA_DataReader.cc>
#include <protocols/stepwise/setup/FullModelInfoSetupFromCommandLine.hh>
#include <protocols/stepwise/setup/StepWiseJobDistributor.hh>
#include <protocols/stepwise/setup/StepWiseCSA_JobDistributor.hh>
#include <protocols/stepwise/setup/StepWiseMonteCarloJobDistributor.hh>
#include <protocols/stepwise/monte_carlo/StepWiseMonteCarlo.hh>
#include <protocols/stepwise/monte_carlo/options/StepWiseMonteCarloOptions.hh>
#include <protocols/stepwise/monte_carlo/util.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/file_util.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/stepwise/monte_carlo/submotif/SubMotifLibrary.hh>
#include <protocols/viewer/viewers.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/stepwise.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <utility/file/FileName.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/format.hh>
#include <fstream>
#include <iostream>
#include <sstream>
#include <string>
#include <list>

Go to the source code of this file.

Functions
static THREAD_LOCAL basic::Tracer	TR ("apps.pilot.rhiju.stepwise_monte_carlo")
void	stepwise_monte_carlo ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 161 of file stepwise.cc.

References utility::io::oc::cout, test.G100_Functions_Input::cst_file, demo.D060_Folding::cycles, basic::init(), loops_kic::min_type, utility::excn::EXCN_Base::msg(), my_main(), ContactMap::native, local::nstruct, option, basic::options::silent, and test.T200_Scoring::weights.

void* my_main

(

void *

)

Definition at line 149 of file stepwise.cc.

References utility::io::oc::cout, utility::options::OptionKeys::options::exit, and stepwise_monte_carlo().

Referenced by main().

void stepwise_monte_carlo

(

)

Definition at line 74 of file stepwise.cc.

References test.G100_Functions_Input::cst_file, test.Workshop7test::native_pose, local::nstruct, option, options, app.surface_docking.surface_docking::path, app.surface_docking.surface_docking::pose, PyMOL_demo::scorefxn, basic::options::silent, utility::options::OptionKeys::options::user, and test.T200_Scoring::weights.

Referenced by my_main().

static THREAD_LOCAL basic::Tracer TR ( "apps.pilot.rhiju.stepwise_monte_carlo"  )

static