contactMap.cc File Reference

simple application for creating a contact map from multiple models of the same protein. More...

#include <string>
#include <devel/init.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector1.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/chemical/ChemicalManager.hh>
#include <protocols/filters/Filter.fwd.hh>
#include <basic/datacache/DataMap.hh>
#include <protocols/contact_map/ContactMap.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/contactMap.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>

Go to the source code of this file.

Typedefs
typedef protocols::contact_map::ContactMap	ContactMap

Functions
static THREAD_LOCAL basic::Tracer	tr ("contactMap")
utility::vector1< ContactMap >	processRegions (std::string region_def, core::pose::Pose const &pose)
int	main (int argc, char *argv[])

Detailed Description

simple application for creating a contact map from multiple models of the same protein.

Author

Joerg Schaarschmidt

Definition in file contactMap.cc.

Typedef Documentation

typedef protocols::contact_map::ContactMap ContactMap

Definition at line 46 of file contactMap.cc.

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 116 of file contactMap.cc.

References utility::io::oc::cout, database, basic::Tracer::Info, devel::init(), app.surface_docking.surface_docking::input, utility::excn::EXCN_Base::msg(), OPT, basic::options::option, options, app.surface_docking.surface_docking::pose, processRegions(), app.pyrosetta_toolkit.modules.SQLPDB::s, basic::options::silent, and tr().

utility::vector1<ContactMap> processRegions	(	std::string	region_def,
		core::pose::Pose const &	pose
	)

Definition at line 53 of file contactMap.cc.

References app.delta_score_per_mutation::data, basic::options::option, options, make_symmdef_file_denovo::pos, and tag.

Referenced by main().

static THREAD_LOCAL basic::Tracer tr ( "contactMap"  )

static

Referenced by main().