HDmakerMover Class Reference

Inheritance diagram for HDmakerMover:

Public Member Functions
	HDmakerMover ()
virtual void	apply (core::pose::Pose &pose)
virtual std::string	get_name () const
virtual numeric::xyzVector < core::Real >	find_midpoint (numeric::xyzVector< core::Real > &xpoints, numeric::xyzVector< core::Real > &ypoints)
virtual Real	bb_score (pose::Pose &pose, core::Size aligned_chain_num, core::scoring::ScoreFunctionOP &scorefxn)
virtual MoverOP	clone () const
virtual MoverOP	fresh_instance () const

Private Attributes
core::scoring::ScoreFunctionOP	scorefxn_
int	sheet_start_
int	sheet_stop_
std::string	pdb_chain_
Real	maxE_

Detailed Description

Definition at line 118 of file homodimer_maker.cc.

Constructor & Destructor Documentation

HDmakerMover::HDmakerMover

(

)

Definition at line 151 of file homodimer_maker.cc.

References E_cutoff, option, sheet_start, and sheet_stop.

Member Function Documentation

void HDmakerMover::apply ( core::pose::Pose &  pose )

virtual

Definition at line 258 of file homodimer_maker.cc.

References utility::io::oc::cout, numeric::kinematic_closure::cross(), test.T200_Scoring::hbond_set, test.T200_Scoring::ii, numeric::midpoint(), basic::options::option, option, app.surface_docking.surface_docking::pose, sheet_start, struct_file, TR(), window_size, and xyz_center_vector().

Referenced by src.protocols.jd2.RosettaScriptWrapper::apply_to_failure().

core::Real HDmakerMover::bb_score ( pose::Pose &  pose, core::Size  aligned_chain_num, core::scoring::ScoreFunctionOP &  scorefxn  )

virtual

Definition at line 176 of file homodimer_maker.cc.

References numeric::distance_squared(), test.T200_Scoring::ii, basic::options::option, app.delta_score_per_mutation::res, TR(), utility_exit_with_message, and numeric::crick_equations::xyz().

virtual MoverOP HDmakerMover::clone ( ) const

inlinevirtual

Definition at line 135 of file homodimer_maker.cc.

numeric::xyzVector< core::Real > HDmakerMover::find_midpoint ( numeric::xyzVector< core::Real > &  xpoints, numeric::xyzVector< core::Real > &  ypoints  )

virtual

Definition at line 164 of file homodimer_maker.cc.

References numeric::midpoint().

virtual MoverOP HDmakerMover::fresh_instance ( ) const

inlinevirtual

Definition at line 139 of file homodimer_maker.cc.

References clone().

virtual std::string HDmakerMover::get_name ( ) const

inlinevirtual

Definition at line 125 of file homodimer_maker.cc.

Member Data Documentation

Real HDmakerMover::maxE_

private

Definition at line 147 of file homodimer_maker.cc.

std::string HDmakerMover::pdb_chain_

private

Definition at line 146 of file homodimer_maker.cc.

core::scoring::ScoreFunctionOP HDmakerMover::scorefxn_

private

Definition at line 144 of file homodimer_maker.cc.

int HDmakerMover::sheet_start_

private

Definition at line 145 of file homodimer_maker.cc.

int HDmakerMover::sheet_stop_

private

Definition at line 145 of file homodimer_maker.cc.

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The documentation for this class was generated from the following file:

• src/apps/public/scenarios/beta_strand_homodimer_design/homodimer_maker.cc