- c -

• c : basic::sampling::orientations::Triple
• C : svm_parameter
• c_root : app.pyrosetta_toolkit.modules.protocols.FloppyTailProtocol.FloppyTailProtocol
• c_str_ : ObjexxFCL::Fstring
• cache : ONE_CLASS_Q , SVC_Q , SVR_Q
• cache_size : svm_parameter
• cached_value_ : utility::options::FileOption
• caliburPath : app.pyrosetta_toolkit.modules.calibur.calibur
• canonical : yaml.emitter.Emitter
• capacity_ : numeric::random::WeightedReservoirSampler< T > , ObjexxFCL::Chunk< T >
• cas_ : CAtrace
• category_ : utility::tag::XMLSchemaElement
• cc_files : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• cd_hbond_terms : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• CDR : app.pyrosetta_toolkit.modules.Structure.Antibody_Structure
• cdrDic : app.pyrosetta_toolkit.modules.tools.interfaces.Antibodies
• CDRS : app.pyrosetta_toolkit.modules.Structure.Antibody_Structure
• Centroid : app.pyrosetta_toolkit.window_modules.protocol_builder.ProtocolBuilder.MainProtocols
• centroid : loadPDB.PDBres
• centroid_ : ScoreEachBenchmark , zinc1_homodimer_design
• centroid_scorefxn_for_ddG_calc_ : zinc1_homodimer_design
• cfg_nd_ : numeric::fourier::kiss_fftndr_state
• cfg_r_ : numeric::fourier::kiss_fftndr_state
• chain : app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo , app.pyrosetta_toolkit.modules.Region.Region , app.pyrosetta_toolkit.modules.Structure.CDR , app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow , loadPDB.new_PDBatom , loadPDB.PDBatom , loadPDB.PDBres , loadPDB.ProteinChain
• chain_ : sidechain_cst_3.Residue
• chain_char_ : ExposedStrandMover
• chain_column : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• chain_entry : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• chain_label : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• ChainIDEntry : app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
• ChainIDLabel : app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
• chainLabel : loadPDB.chainType
• chainList : loadPDB.chainType , loadPDB.Protein
• chains : loadPDB.Protein
• chains_ : HPatchByChainNPDCalculator
• chainTypeList : loadPDB.Protein
• change_occupancies_var : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• change_patch_button : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
• change_scorefunction_button : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
• channel_ : basic::Tracer , basic::Tracer::TracerProxy
• channel_color_ : basic::Tracer
• channel_id_ : utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• channel_name_color_ : basic::Tracer
• chaOcc : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• char_buffer_p_ : utility::io::ozstream
• char_msg_ : utility::SimulateMPIMessage
• character : yaml.reader.ReaderError
• check_button_auto_write : app.pyrosetta_toolkit.window_main.frames.OutputFrame.OutputFrame
• check_button_Cen : app.pyrosetta_toolkit.window_modules.protocol_builder.ProtocolBuilder.MainProtocols
• check_button_overwrite : app.pyrosetta_toolkit.window_main.frames.OutputFrame.OutputFrame
• check_button_Shear : app.pyrosetta_toolkit.window_modules.protocol_builder.ProtocolBuilder.MainProtocols
• check_c_root : app.pyrosetta_toolkit.modules.protocols.FloppyTailProtocol.FloppyTailProtocol
• check_constraints : app.pyrosetta_toolkit.modules.protocols.FloppyTailProtocol.FloppyTailProtocol
• check_linear : app.pyrosetta_toolkit.modules.protocols.FloppyTailProtocol.FloppyTailProtocol
• check_repack : app.pyrosetta_toolkit.modules.protocols.FloppyTailProtocol.FloppyTailProtocol
• check_rmsd_ : ExposedStrandMover
• check_rosetta_var : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• check_unrecognized_button : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• checkbutonn_repack_con_and_insert : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• checkbutton_randomize : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• checkbutton_repack_con : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• checkbutton_smooth : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• chi_mm : app.surface_docking.movers.FullAtomRelax
• child_ : numeric::expression_parser::ArithmeticASTFactor
• children_ : numeric::expression_parser::ArithmeticASTExpression , numeric::expression_parser::ArithmeticASTFunction , numeric::expression_parser::ArithmeticASTRestExpression , numeric::expression_parser::ArithmeticASTRestTerm , numeric::expression_parser::ArithmeticASTTerm
• chunk_exponent_ : ObjexxFCL::ChunkVector< typename >
• chunk_mask_ : ObjexxFCL::ChunkVector< typename >
• chunk_size_ : ObjexxFCL::ChunkVector< typename > , utility::sql_database::session
• chunks_ : ObjexxFCL::ChunkVector< typename >
• clash2b : FragmentAssemblyMover
• clash_dist_ : ScoreFragmentSetMover
• clash_wt_ : FragmentAssemblyMover
• clean_pdb : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• cleaned_pdb_path : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• close2b : FragmentAssemblyMover
• close_wt_ : FragmentAssemblyMover
• closed : yaml.serializer.Serializer
• cm_ : ResidueTypeBenchmark
• Cn : Solver
• code_ : utility::keys::AutoKey< O, S, C > , utility::keys::UserKey< O, S, C >
• coef : numeric::kinematic_closure::p
• coef0 : Kernel , svm_parameter
• coefficients_ : numeric::Polynomial_1d
• cofactors : arls_impl.DockingCase
• coheap_ : utility::heap
• col : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.BuildEquivelanceTest
• color : test.Workshop9_my_shapes.MyShape
• color_pat : app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.TkConsoleView
• column : yaml.emitter.Emitter , yaml.error.Mark , yaml.reader.Reader , yaml.scanner.Scanner , yaml.scanner.SimpleKey
• column_ : utility::json_spirit::Error_position
• column_index_map_ : basic::database::insert_statement_generator::InsertGenerator
• column_list_ : basic::database::insert_statement_generator::InsertGenerator
• column_name_ : basic::database::insert_statement_generator::RowDataBase
• column_separator_ : basic::resource_manager::locator::DatabaseResourceLocator
• columns_ : basic::database::schema_generator::Constraint , basic::database::schema_generator::ForeignKey , basic::database::schema_generator::Index , basic::database::schema_generator::PrimaryKey , basic::database::schema_generator::Schema
• comma_delim : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• common_option : app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager
• common_options : app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager
• common_scorefunctions : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
• complete_sep : app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.IterableIPShell
• complex_type_ : utility::tag::XMLSchemaElement
• compression_ : utility::io::izstream , utility::io::ozstream
• condition_ : numeric::expression_parser::ITEExpression
• connected_vertices_ : utility::graph::HideVertexVisitor< Graph >
• const : tools.CppParser.CppFunction
• const_overloaded : tools.CppParser.CppFunction
• constraint_file_paths : app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• constraints : app.surface_docking.movers.FullAtomRelax
• constraints_ : basic::database::schema_generator::Schema
• constructed_objects : yaml.constructor.BaseConstructor
• constructor : tools.CppParser.CppFunction
• constructors : tools.CppParser.CppClass
• contactMap : calccontacts.contactProtein
• contactPDB : calccontacts.contactProtein
• container_ : numeric::kdtree::KDPointList , ObjexxFCL::SetWrapper< typename >
• contains_end_block_dox_comment : tools.dox_extract.dox_extract
• contains_start_block_dox_comment : tools.dox_extract.dox_extract
• contains_three_slash_dox_comment : tools.dox_extract.dox_extract
• context : tools.CppParser.CppClass , tools.CppParser.CppEnum , tools.CppParser.CppFunction , tools.CppParser.CppNamespace , tools.CppParser.CppType_Typedef , tools.CppParser.CppVariable , yaml.error.MarkedYAMLError
• context_mark : yaml.error.MarkedYAMLError
• Contexts : tools.CppParser.ClangXML , tools.CppParser.GccXML , tools.CppParser.ReferenceSection
• control : app.pyrosetta_toolkit.window_modules.vicinity_options.vicinity_window.vicinityrelaxwindow
• coordinates_per_entry : numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real >
• coordlist : loadPDB.PDBres
• coords : loadPDB.new_PDBatom , loadPDB.PDBatom
• count : calccontacts.shellAtom , numeric::geometry::hashing::Counter
• count_ : numeric::model_quality::RmsData , utility::keys::KeyCount
• counts_ : numeric::MultiDimensionalHistogram
• cout : app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.IPythonView
• cover : basic::sampling::orientations::QuatDBMetadata
• coverage : basic::sampling::orientations::QuaternionGrid
• Cp : Solver
• cpp_defines : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• creator_map_ : basic::resource_manager::ResourceLoaderFactory , basic::resource_manager::ResourceLocatorFactory , basic::resource_manager::ResourceOptionsFactory
• creators_ : utility::factory::WidgetFactory< Creator >
• creators_map_ : basic::resource_manager::FallbackConfigurationFactory , basic::resource_manager::ResourceManagerFactory
• cstyle_A_decomp_ : basic::svd::SVD_Solver
• cstyle_b_ : basic::svd::SVD_Solver
• cstyle_tmp_ : basic::svd::SVD_Solver
• cstyle_v_ : basic::svd::SVD_Solver
• cstyle_w_ : basic::svd::SVD_Solver
• cstyle_x_ : basic::svd::SVD_Solver
• Cter : app.pyrosetta_toolkit.modules.Structure.CDR
• ctype : options_class.Option
• cumulative_distribution_ : numeric::random::WeightedSampler
• cumulative_distribution_valid_ : numeric::random::WeightedSampler
• cur : app.pyrosetta_toolkit.modules.SQLPDB.PDB_database
• cur_transaction_ : utility::sql_database::session
• curr_cycle : app.surface_docking.movers.FullAtomRelax
• curr_num_in_recent_history_ : utility::recent_history_queue
• curr_pos_ : numeric::expression_parser::TokenSet , utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• current : app.pyrosetta_toolkit.modules.Region.Regions
• current_accessible_sa : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• current_chain : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• current_chainFull : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• current_default : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager
• current_directory : app.pyrosetta_toolkit.pyrosetta_toolkit.main_window , app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager
• current_event : yaml.parser.Parser
• current_main_selection : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager
• current_name : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager , src.PyJobDistributor
• current_name_selection : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager
• current_num : src.PyJobDistributor
• current_p_ : utility::json_spirit::Semantic_actions< Value_type, Iter_type >
• current_relative_mutability : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• current_residue : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• current_residue_name : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• current_residue_name_full : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• current_residueFull : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• current_surface_probability : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• current_three_letter : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager
• current_type_selection : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager
• current_variant : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager
• currently_sending_ : utility::signals::SignalHub< ResultType, Signal >
• custom_option : app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager
• custom_type_name_ : utility::tag::XMLSchemaType
• cutoff : numeric::interpolation::spline::LinearFunction
• Cyan : basic::Tracer
• cycles : app.pyrosetta_toolkit.modules.protocols.AnalysisProtocols.VIP_Wrapper , app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow