- p -

• PackingAngle() : PackingAngle
• Pair_impl() : utility::json_spirit::Pair_impl< Config >
• pair_query() : pyrosetta.protocols.structure_search.StructureSearchManager
• parent() : numeric::ClusteringTreeNode , numeric::kdtree::KDNode , utility::file::PathName
• parse() : numeric::expression_parser::ArithmeticASTAndClause , numeric::expression_parser::ArithmeticASTExpression , numeric::expression_parser::ArithmeticASTFactor , numeric::expression_parser::ArithmeticASTFunction , numeric::expression_parser::ArithmeticASTOrClause , numeric::expression_parser::ArithmeticASTRestAndClause , numeric::expression_parser::ArithmeticASTRestExpression , numeric::expression_parser::ArithmeticASTRestOrClause , numeric::expression_parser::ArithmeticASTRestTerm , numeric::expression_parser::ArithmeticASTTerm , numeric::expression_parser::ArithmeticASTValue
• parse_arg_index() : fmt::BasicFormatter< CharType, ArgFormatter >
• parse_arg_name() : fmt::BasicFormatter< CharType, ArgFormatter >
• parse_my_tag() : basic::database::DatabaseSessionOptions , basic::resource_manager::locator::DatabaseResourceLocator , basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileSystemResourceLocator , basic::resource_manager::locator::NullResourceLocator , basic::resource_manager::ResourceLocator
• parse_strand_ids() : ExposedStrandMover
• parsed_protocol() : pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask
• parser() : numeric::CalculatorParser , pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask
• path() : utility::file::FileName , utility::file::PathName
• PathName() : utility::file::PathName
• PathOption() : utility::options::PathOption
• PathOptionKey() : utility::options::PathOptionKey
• PathVectorOption() : utility::options::PathVectorOption
• PathVectorOptionKey() : utility::options::PathVectorOptionKey
• PausableSignalHub() : utility::signals::PausableSignalHub< ResultType, Signal >
• pause() : utility::signals::PausableSignalHub< ResultType, Signal >
• pausing() : utility::signals::PausableSignalHub< ResultType, Signal >
• PDB_IOBenchmark() : PDB_IOBenchmark
• peek() : utility::io::icstream , utility::io::irstream , utility::io::izstream
• PeptoidDesignMover() : PeptoidDesignMover
• per_class_includes() : binder::Config
• PerformanceBenchmark() : PerformanceBenchmark
• period_certification() : numeric::random::mt19937_RG
• periodic() : numeric::interpolation::Histogram< typename, typename >
• Permute() : basic::sampling::orientations::Permute
• phi() : numeric::EulerAngles< typename > , numeric::sphericalVector< typename >
• phi_degrees() : numeric::EulerAngles< typename >
• phi_radians() : numeric::EulerAngles< typename >
• PhProtocol() : PhProtocol
• pi() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_2() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_2_over_3() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_3_over_4() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_over_180() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_over_2() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_over_3() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pi_over_4() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• pipe() : fmt::File
• pivot() : numeric::MathMatrix< T >
• POD2() : POD2
• POD3() : POD3
• POD4() : POD4
• POD5() : POD5
• POD6() : POD6
• point() : numeric::HomogeneousTransform< T >
• Point() : numeric::interpolation::spline::Point
• point() : numeric::kdtree::KDNode
• Pointers_and_References() : Pointers_and_References
• PolycubicSpline() : numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 >
• PolycubicSplineBase() : numeric::interpolation::spline::PolycubicSplineBase
• Polynomial_1d() : numeric::Polynomial_1d
• pop() : numeric::expression_parser::TokenSet , ObjexxFCL::internal::ObserverGraph , utility::graph::NegSpaceElement< T > , utility::vectorL< SSize, T, A >
• pop_back() : ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< typename > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyVector< K, T >
• pop_next_message_for_node_of_type() : utility::SimulateMPIData
• pop_next_message_of_type() : utility::SimulateMPIData
• pop_node() : utility::tag::XMLErrorHandler
• pos_in_history_queue() : utility::recent_history_queue
• pose() : pyrosetta.distributed.packed_pose.core.PackedPose
• pose_num() : sidechain_cst_3.Residue
• poses() : pyrosetta.io.silent_file_map.SilentFileMap
• positive() : ObjexxFCL::DynamicIndexRange , ObjexxFCL::IndexRange
• positive_value() : ObjexxFCL::IndexRange
• precision() : basic::Tracer , fmt::AlignSpec , fmt::FormatSpec , fmt::TypeSpec< TYPE > , numeric::IOTraits< T > , numeric::IOTraits< double > , numeric::IOTraits< float > , numeric::IOTraits< int > , numeric::IOTraits< long double > , numeric::IOTraits< long int > , numeric::IOTraits< short int > , numeric::IOTraits< unsigned int > , numeric::IOTraits< unsigned long int > , numeric::IOTraits< unsigned short int > , ObjexxFCL::TypeTraits< T > , ObjexxFCL::TypeTraits< double > , ObjexxFCL::TypeTraits< float > , ObjexxFCL::TypeTraits< int > , ObjexxFCL::TypeTraits< long double > , ObjexxFCL::TypeTraits< long int > , ObjexxFCL::TypeTraits< short int > , ObjexxFCL::TypeTraits< unsigned int > , ObjexxFCL::TypeTraits< unsigned long int > , ObjexxFCL::TypeTraits< unsigned short int >
• predicate_cmp_filename() : utility::predicate_cmp_filename
• predict() : utility::libsvm::Svm_rosetta
• predict_probability() : utility::libsvm::Svm_rosetta
• prefix() : utility::options::OptionCollection
• prefix_code() : binder::Binder , binder::ClassBinder
• prepack_input_structure() : supercharge
• prepack_pose() : PhProtocol
• prepare_for_output() : utility::tag::XMLSchemaAttribute , utility::tag::XMLSchemaComplexType , utility::tag::XMLSchemaElement , utility::tag::XMLSchemaModelGroup , utility::tag::XMLSchemaRestriction , utility::tag::XMLSchemaTopLevelElement
• prepare_for_query() : numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real > , numeric::coordinate_fitting::FlatLookup< QueryType, EntryType, Real >
• prepare_int_buffer() : fmt::BasicWriter< Char >
• prepare_rotamer_sets() : InteractionGraphPerformanceBenchmark
• prepare_scoring_function() : DockGlycansProtocol
• prepare_sequence_of_subelement_sets() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_choice_opt() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_choice_req() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_repeatable() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_single_instance_optional() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_single_instance_required() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepare_subelement_single_instance_required_ordered() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• prepend_channel_name() : basic::TracerImpl
• pretty() : numeric::expression_parser::ASTPrinter
• prev() : utility::list_element< T >
• previous() : utility::graph::DirectedEdgeListElement , utility::graph::EdgeListElement
• PrimaryKey() : basic::database::schema_generator::PrimaryKey
• print() : basic::database::schema_generator::Column , basic::database::schema_generator::Constraint , basic::database::schema_generator::DbBigInt , basic::database::schema_generator::DbDataType , basic::database::schema_generator::DbDouble , basic::database::schema_generator::DbInteger , basic::database::schema_generator::DbReal , basic::database::schema_generator::DbText , basic::database::schema_generator::DbTextKey , basic::database::schema_generator::DbUUID , basic::database::schema_generator::ForeignKey , basic::database::schema_generator::GreaterThanConstraint , basic::database::schema_generator::Index , basic::database::schema_generator::PrimaryKey , basic::database::schema_generator::Schema , basic::database::schema_generator::UniqueConstraint , basic::MetricValue< T >
• Print() : basic::sampling::orientations::Quaternion
• print() : basic::sampling::orientations::QuaternionGrid
• Print() : basic::sampling::orientations::QuatSet
• print() : fmt::BufferedFile , numeric::expression_parser::TokenSet , utility::graph::DirectedNode , utility::graph::LowMemNode , utility::graph::Node
• print_hbonds() : PhProtocol
• print_header() : utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• print_netcharge_and_mutations() : supercharge
• print_roc_curve() : numeric::RocCurve
• print_score() : MPDomainAssembly
• print_sheets() : ExposedStrandMover
• print_sheets_extras() : ExposedStrandMover
• print_to_curr_pos() : numeric::expression_parser::TokenSet
• print_unprocessed_incoming_messages() : utility::SimulateMPI
• print_unprocessed_outgoing_messages() : utility::SimulateMPI
• print_vertices() : utility::graph::Digraph , utility::graph::Graph , utility::graph::LowMemGraph< _Node, _Edge >
• PrintEuler() : basic::sampling::orientations::Quaternion
• priority() : basic::TracerImpl
• private_index() : utility::keys::AutoKey< O, S, C > , utility::keys::Key , utility::keys::UserKey< O, S, C > , utility::keys::VariantKey< K >
• process_fragfile() : DockFragmentsMover
• process_packet() : PyMOL-RosettaServer.PR_PyMOLServer
• processed() : utility::SimulateMPIMessage
• ProfileThis() : basic::ProfileThis
• project_normal() : numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• project_parallel() : numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• projected_normal() : numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• projected_parallel() : numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• provide_xml_schema() : basic::resource_manager::locator::DatabaseResourceLocator , basic::resource_manager::locator::DatabaseResourceLocatorCreator , basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileListResourceLocatorCreator , basic::resource_manager::locator::FileSystemResourceLocator , basic::resource_manager::locator::FileSystemResourceLocatorCreator , basic::resource_manager::locator::NullResourceLocator , basic::resource_manager::locator::NullResourceLocatorCreator , basic::resource_manager::ResourceLoaderCreator , basic::resource_manager::ResourceLocatorCreator
• Proxy() : ObjexxFCL::CArrayP< typename >
• proxy() : ObjexxFCL::CArrayP< typename >
• Proxy() : ObjexxFCL::CArrayP< typename >
• proxy() : ObjexxFCL::FArray< typename >
• ProxySentinel() : ObjexxFCL::internal::ProxySentinel
• psi() : numeric::EulerAngles< typename >
• psi_degrees() : numeric::EulerAngles< typename >
• psi_radians() : numeric::EulerAngles< typename >
• ptr_registry() : utility::factory::Factory< typename >
• ptr_registry_transfer() : utility::factory::Factory< typename >
• pure_test_p() : test.T850_SubClassing.PyOverloadTest , utility::py::OverloadTest
• pure_test_ref() : test.T850_SubClassing.PyOverloadTest , utility::py::OverloadTest
• push() : ObjexxFCL::internal::ObserverGraph
• push_back() : fmt::Buffer< T > , numeric::IntervalSet< typename > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< typename > , utility::graph::DirectedEdgeList , utility::graph::EdgeList , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyVector< K, T > , utility::options::VectorOption_T_< K, T >
• push_front() : utility::graph::DirectedEdgeList , utility::graph::EdgeList
• push_node() : utility::tag::XMLErrorHandler
• push_to_front_of_history_queue() : utility::recent_history_queue
• put() : utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::ocstream , utility::io::orstream , utility::io::ozstream , zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >
• put_back_from_zip_stream() : zlib_stream::basic_unzip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• put_long_as_uint32() : utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >
• putback() : utility::io::icstream , utility::io::irstream , utility::io::izstream
• px() : numeric::HomogeneousTransform< T > , numeric::xyzTransform< typename >
• py() : numeric::HomogeneousTransform< T > , numeric::xyzTransform< typename >
• pythag() : basic::svd::SVD_Solver
• pz() : numeric::HomogeneousTransform< T > , numeric::xyzTransform< typename >