- r -

• R() : numeric::BodyPosition< typename >
• R_refresh() : numeric::BodyPosition< typename >
• rad2deg() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• radial_bin_index() : numeric::geometry::hashing::SixDCoordinateBinner
• radians_to_degrees() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• radius() : numeric::geometry::hashing::Ball , numeric::geometry::hashing::xyzStripeHash::const_iterator , numeric::sphericalVector< typename >
• ramp_score_weight() : DockGlycansProtocol
• random_element() : numeric::random::RandomGenerator
• random_point() : numeric::IntervalSet< typename >
• random_range() : numeric::random::RandomGenerator
• random_range2() : numeric::random::RandomGenerator
• random_sample() : numeric::random::WeightedSampler
• RandomGenerator() : numeric::random::RandomGenerator
• range() : numeric::MultiDimensionalHistogram , utility::fixedsizearray0< T, S > , utility::fixedsizearray1< T, S >
• ranges() : numeric::DiscreteIntervalEncodingTree< T >
• raw_default_string() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• raw_value_string() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• rbegin() : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• rdbuf() : utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::ocstream , utility::io::orstream , utility::io::ozstream , zlib_stream::basic_zip_istreambase< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >
• read() : binder::Config , fmt::File , utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::tag::Tag
• read_cmdline_erraser() : erraser_option.erraser_option
• read_cmdline_erraser_single_res() : erraser_option.erraser_option
• read_cmdline_full() : erraser_option.erraser_option
• read_data() : numeric::kdtree::KDPoint
• read_footer() : zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
• read_from_db() : numeric::interpolation::Histogram< typename, typename >
• read_in_insert_loop_info() : APDBCMover
• read_next() : utility::json_spirit::Stream_reader< Istream_type, Value_type > , utility::json_spirit::Stream_reader_thrower< Istream_type, Value_type >
• read_resource_locators_tags() : basic::resource_manager::ResourceManager
• read_resources_from_xml() : basic::resource_manager::ResourceManager
• read_resources_tags() : basic::resource_manager::ResourceManager
• read_uint32() : zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
• readsome() : utility::io::icstream , utility::io::irstream , utility::io::izstream
• real_eigenvalues() : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• real_eigenvectors() : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• RealOption() : utility::options::RealOption
• RealOptionKey() : utility::options::RealOptionKey
• RealVectorOption() : utility::options::RealVectorOption
• RealVectorOptionKey() : utility::options::RealVectorOptionKey
• receive() : basic::mpi::DbMoverMessageListener , basic::mpi::MessageListener
• receive_char_from_node() : utility::SimulateMPI
• receive_double_from_node() : utility::SimulateMPI
• receive_doubles_from_node() : utility::SimulateMPI
• receive_integer_from_anyone() : utility::SimulateMPI
• receive_integer_from_node() : utility::SimulateMPI
• receive_integers_from_node() : utility::SimulateMPI
• receive_linkunits_from() : utility::signals::SignalHub< ResultType, Signal >
• receive_size_from_node() : utility::SimulateMPI
• receive_sizes_from_node() : utility::SimulateMPI
• receive_string_from_node() : utility::SimulateMPI
• receive_tokens_from() : utility::signals::TokenHub< ResultType, Signal >
• recent_history_queue() : utility::recent_history_queue
• reconstruct_gradient() : Solver
• record() : numeric::MultiDimensionalHistogram
• record_pose_metrics() : DockGlycansProtocol
• recover_low() : myMC
• recursively_model_rotamer_chis() : zinc_stats::ZincStatisticGenerator
• recursively_write_ct_to_schema() : utility::tag::XMLSchemaRepeatableCTNode
• redesign_20() : InteractionGraphPerformanceBenchmark
• redimension() : ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• reduce_expression() : ObjexxFCL::Dimension
• reducible() : ObjexxFCL::Dimension , ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum
• ref() : ObjexxFCL::Fsubstring
• reference() : ObjexxFCL::Dimension , ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum
• reference_copy() : ObjexxFCL::Dimension
• reference_name() : utility::tag::XMLSchemaElement
• ReferenceCount() : utility::pointer::ReferenceCount
• refuse_unexpected_files() : utility::io::FileContentsMap
• register_calculators() : HDdesignMover
• register_options() : DockGlycansProtocol , MPDomainAssembly
• Registrant() : utility::factory::Registrant< typename >
• registry() : utility::factory::Factory< typename >
• reinitialize_for_each_job() : AnchorFinderMover , ExtractATD , IAMover , PackingAngle , PhProtocol , UBQ_E2Mover , UBQ_GTPase_disulfide_Mover
• reinitialize_for_new_input() : AnchorFinderMover , ExtractATD , IAMover , PackingAngle , PhProtocol , UBQ_E2Mover , UBQ_GTPase_disulfide_Mover
• relative() : utility::file::FileName , utility::file::PathName
• relax_pose() : PhProtocol
• release_buffer() : utility::signals::BufferedSignalHub< ResultType, Signal >
• release_file() : utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >
• remainder() : numeric::RemainderSelector< T, bool > , numeric::RemainderSelector< T, true > , ObjexxFCL::RemainderSelector< T, bool > , ObjexxFCL::RemainderSelector< T, true >
• remove() : utility::factory::Factory< typename >
• Remove() : utility::graph::RingDetection< Graph >
• remove() : utility::in_place_list< T > , utility::keys::KeyLookup< K >
• remove_as_observer() : ObjexxFCL::Dimension , ObjexxFCL::DynamicIndexRange , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray2D< typename >
• remove_back() : utility::vectorL< SSize, T, A >
• remove_input_file() : utility::Inline_File_Provider
• remove_invalid() : utility::signals::SignalHub< ResultType, Signal >
• remove_observer() : ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum , ObjexxFCL::Observer , ObjexxFCL::ObserverMulti , ObjexxFCL::ObserverSingle
• remove_redundant() : numeric::UniformRotationSampler
• RemoveObject() : numeric::VoxelGrid< typename >
• RemoveObjects() : numeric::VoxelGrid< typename >
• rend() : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• replace_col() : numeric::MathMatrix< T >
• replace_layer() : numeric::MathNTensor< T, N > , numeric::MathTensor< T >
• replace_row() : numeric::MathMatrix< T >
• Report() : basic::gpu::Timer , basic::Report
• report_unhandled_arg() : fmt::ArgVisitor< Impl, Result >
• Reporter() : basic::Reporter
• request() : basic::mpi::DbMoverMessageListener , basic::mpi::MessageListener
• request_bindings() : binder::Binder , binder::Context
• request_bindings_and_skipping() : binder::Binder , binder::ClassBinder , binder::EnumBinder , binder::FunctionBinder
• request_by_name() : basic::sampling::orientations::QuaternionGridManager
• request_by_radius() : basic::sampling::orientations::QuaternionGridManager
• request_by_size() : basic::sampling::orientations::QuaternionGridManager
• request_file() : utility::Inline_File_Provider_Hook
• request_skipping() : binder::Binder
• require_explicit_deallocation_for_resource() : basic::resource_manager::ResourceManager
• required_attribute() : utility::tag::XMLSchemaAttribute
• reserve() : fmt::Buffer< T > , ObjexxFCL::Chunk< T > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• reserve_destination_size() : utility::subset_mapping
• reserve_edge_space() : utility::graph::UEVertex< V, E >
• ReservoirSampler() : numeric::random::ReservoirSampler< T >
• Reset() : basic::gpu::Timer
• reset() : numeric::geometry::BoundingBox< typename > , numeric::random::WeightedReservoirSampler< T >
• reset_accessed_options() : utility::tag::Tag
• reset_all_flags() : numeric::ClusteringTreeNode
• reset_counts() : numeric::MultiDimensionalHistogram
• reset_coval() : utility::heap
• reset_state() : utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• reset_zip_stream() : zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >
• reshape() : ObjexxFCL::ChunkVector< typename >
• resi() : numeric::geometry::hashing::Ball , numeric::geometry::hashing::xyzStripeHash
• residue_energy() : test.T850_SubClassing.MyNewCI1B , test.T860_SubClassing_EnergyMethods.MyCI1B_Method , test.T870_SubClassing_EnergyMethods2.CI1B_Method , test.Workshop9_my_shapes.LengthScoreMethod
• residue_pair_energy() : test.T870_SubClassing_EnergyMethods2.CD2B_Method , test.T870_SubClassing_EnergyMethods2.CI2B_Method , test.Workshop9_my_shapes.CI2BScoreMethod
• ResidueChainVectorOption() : utility::options::ResidueChainVectorOption
• ResidueChainVectorOptionKey() : utility::options::ResidueChainVectorOptionKey
• ResidueTypeBenchmark() : ResidueTypeBenchmark
• resize() : basic::datacache::DataCache< Data > , fmt::Buffer< T > , numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fft_state , numeric::fourier::kiss_fftnd_state , numeric::fourier::kiss_fftndr_state , numeric::fourier::kiss_fftr_state , numeric::fourier::kiss_fftsplit_state , numeric::random::WeightedSampler , numeric::VoxelArray< _Float, _Value > , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::FArray< typename > , utility::in_place_list< T > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyVector< K, T >
• resize_counts() : numeric::MultiDimensionalHistogram
• resnum_and_chain() : utility::options::ResidueChainVectorOption
• ResourceLoaderFactory() : basic::resource_manager::ResourceLoaderFactory
• ResourceLoaderRegistrator() : basic::resource_manager::ResourceLoaderRegistrator< T >
• ResourceLocator() : basic::resource_manager::ResourceLocator
• ResourceLocatorFactory() : basic::resource_manager::ResourceLocatorFactory
• ResourceLocatorRegistrator() : basic::resource_manager::ResourceLocatorRegistrator< T >
• ResourceManager() : basic::resource_manager::ResourceManager
• ResourceManagerFactory() : basic::resource_manager::ResourceManagerFactory
• ResourceManagerRegistrator() : basic::resource_manager::ResourceManagerRegistrator< T >
• resources_begin() : basic::datacache::DataMap
• resources_end() : basic::datacache::DataMap
• resources_that_have_been_declared() : basic::resource_manager::ResourceManager
• rest_and_clause_token() : numeric::expression_parser::ArithmeticASTRestAndClause
• rest_expression_token() : numeric::expression_parser::ArithmeticASTRestExpression
• rest_or_clause_token() : numeric::expression_parser::ArithmeticASTRestOrClause
• rest_term_token() : numeric::expression_parser::ArithmeticASTRestTerm
• restoreState() : numeric::random::mt19937_RG , numeric::random::RandomGenerator , numeric::random::standard_RG , numeric::random::uniform_RG
• restrict_access() : utility::options::Option
• retrieve_next_message() : utility::SimulateMPIData
• return_file_callback() : utility::Inline_File_Provider_Hook
• right() : numeric::ClusteringTreeNode
• right_child() : numeric::kdtree::KDNode
• right_justified() : ObjexxFCL::Cstring , ObjexxFCL::Fstring
• right_justify() : ObjexxFCL::Cstring , ObjexxFCL::Fstring
• right_multiply_by() : numeric::Quaternion< typename > , numeric::xyzMatrix< typename > , ObjexxFCL::FArray2< typename >
• right_multiply_by_inverse_of() : numeric::Quaternion< typename >
• right_multiply_by_transpose() : numeric::xyzMatrix< typename > , ObjexxFCL::FArray2< typename >
• right_transform_by() : numeric::BodyPosition< typename >
• right_transform_by_inverse_of() : numeric::BodyPosition< typename >
• RingDetection() : utility::graph::RingDetection< Graph >
• RingEdgeAnnotationVisitor() : utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap >
• RingSizeVisitor() : utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• RmsData() : numeric::model_quality::RmsData
• RNA_DeNovoJobQueen() : RNA_DeNovoJobQueen
• roc_curve() : numeric::RocCurve
• RocCurve() : numeric::RocCurve
• RocPoint() : numeric::RocPoint
• roll() : myMC
• rollmove_to_inverse_C2_symmetry() : zinc2_homodimer_setup
• root() : numeric::kdtree::KDTree
• root1() : numeric::Polynomial_1d
• root2() : numeric::Polynomial_1d
• rot() : numeric::xyzTransform< typename >
• rot_deg() : numeric::xyzTransform< typename >
• rotation_angle() : numeric::xyzTransform< typename >
• rotation_angle_degrees() : numeric::xyzTransform< typename >
• rotation_axis() : numeric::xyzTransform< typename >
• rotation_cosine() : numeric::xyzTransform< typename >
• rotation_matrix() : basic::sampling::orientations::Quaternion , numeric::HomogeneousTransform< T >
• rotation_sine() : numeric::xyzTransform< typename >
• row() : numeric::xyzMatrix< typename >
• row_x() : numeric::xyzMatrix< typename >
• row_y() : numeric::xyzMatrix< typename >
• row_z() : numeric::xyzMatrix< typename >
• RowData() : basic::database::insert_statement_generator::RowData< T >
• RowDataBase() : basic::database::insert_statement_generator::RowDataBase
• RowPointers() : numeric::RowPointers< T >
• rows() : numeric::xyzMatrix< typename >
• rows_constructor() : numeric::xyzMatrix< typename >
• RowsPointer() : numeric::RowsPointer< T >
• RowVectors() : numeric::RowVectors< T >
• rstrip() : ObjexxFCL::Fstring
• rstrip_whitespace() : ObjexxFCL::Fstring
• rstripped() : ObjexxFCL::Fstring
• rstripped_whitespace() : ObjexxFCL::Fstring
• rt6() : numeric::xyzTransform< typename >
• run() : ConsensusFragmentMover , DatabaseIOBenchmark , DesignBenchmark , DockFragmentsMover , DockingBenchmark< dock, TScale > , FastRelaxPerformanceBenchmark , FragmentAssemblyMover , InteractionGraphPerformanceBenchmark , LigandDockBenchmark , LigandDockScriptBenchmark , MinimizerBenchmark< sft, TScale > , OptionCollectionBenchmark , PDB_IOBenchmark , PerformanceBenchmark , pyrosetta.tests.distributed.test_gil.HeartBeat , ResidueTypeBenchmark , ScoreBenchmark , ScoreEachBenchmark , ScoreFragmentSetMover , ShearMoverBenchmark , SmallMoverBenchmark , SolutionRescoreMover , XMLParseBenchmark
• run_decomp_svd() : basic::svd::SVD_Solver
• run_long_ranged_two_body_energy() : ScoreEachBenchmark
• run_one_body_energy() : ScoreEachBenchmark
• run_score_svd_on_matrix() : basic::svd::SVD_Solver
• run_score_svd_without_solving() : basic::svd::SVD_Solver
• run_short_ranged_two_body_energy() : ScoreEachBenchmark
• run_solve_svd() : basic::svd::SVD_Solver
• RuntimeError() : fmt::internal::RuntimeError