- r -

• R : numeric::xyzTransform< typename >
• r : Solver::SolutionInfo
• R_ : numeric::BodyPosition< typename >
• R_fresh_ : numeric::BodyPosition< typename >
• radius : basic::sampling::orientations::QuatDBMetadata , test.Workshop9_my_shapes.MyCircle
• radius_ : numeric::geometry::hashing::Ball , numeric::sphericalVector< typename >
• randomizerA_ : DockGlycansProtocol
• rank : utility::graph::DS_Node
• rank_ : utility::SimulateMPI
• raw_utf8_ : utility::json_spirit::Generator< Value_type, Ostream_type >
• read_counts_ : utility::io::FileContentsMap
• read_limit_ : utility::io::FileContentsMap
• real_indices_ : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• real_vectors_ : utility::options::OptionCollection
• reals_ : utility::options::OptionCollection
• reason_ : utility::json_spirit::Error_position
• rebuild_all : erraser_option.erraser_option
• rebuild_res : erraser_option.erraser_option
• rebuild_res_list : erraser_option.erraser_option
• rebuild_res_pdb : erraser_option.erraser_option
• rebuild_rmsd : erraser_option.erraser_option
• recent_history_queue_ : utility::recent_history_queue
• Red : basic::Tracer , basic::TracerImpl
• ref_pose_ : DockGlycansProtocol , FitMover
• reference_columns_ : basic::database::schema_generator::ForeignKey
• reference_table_ : basic::database::schema_generator::ForeignKey
• refine_pose_list_ : RNA_DeNovoJobQueen
• refine_stage_ : PhProtocol
• refuse_unexpected_files_ : utility::io::FileContentsMap
• relevant_ : utility::options::OptionCollection
• remove_trailing_zeros_ : utility::json_spirit::Generator< Value_type, Ostream_type >
• rep_mult_ : DockGlycansProtocol
• repeatable_max_occurs_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• repeatable_min_occurs_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• report_ : basic::Reporter
• res : pyrosetta.bindings.pose.ResidueLabelAccessor
• res_slice : erraser_option.erraser_option
• res_to_loose_ : ExposedStrandMover
• reservoir_ : numeric::random::WeightedReservoirSampler< T >
• Reset : basic::Tracer , basic::TracerImpl
• resi_ : sidechain_cst_3.Residue
• resid_ : numeric::geometry::hashing::Ball
• resid_2_chain_and_resid_ : HPatchByChainNPDCalculator
• residue_chain_vectors_ : utility::options::OptionCollection
• residue_type : local::HbondInfo
• residue_types_ : ResidueTypeBenchmark
• resn_ : sidechain_cst_3.Residue
• resnum : local::HbondInfo
• Resolution_ : numeric::VoxelGrid< typename >
• ResolutionX_ : numeric::VoxelGrid< typename >
• ResolutionY_ : numeric::VoxelGrid< typename >
• ResolutionZ_ : numeric::VoxelGrid< typename >
• resource_declarations_ : basic::resource_manager::ResourceManager
• resource_locator_declarations_ : basic::resource_manager::ResourceManager
• resource_locator_tags_ : basic::resource_manager::ResourceManager
• resource_locators_ : basic::resource_manager::ResourceManager
• resource_map_ : basic::datacache::DataMap
• resource_tags_ : basic::resource_manager::ResourceManager
• resources_ : basic::resource_manager::ResourceManager
• resources_a_resource_depends_on_ : basic::resource_manager::ResourceManager
• resources_being_constructed_stack_ : basic::resource_manager::ResourceManager
• resources_to_hold_until_deallocation_explicitly_requested_ : basic::resource_manager::ResourceManager
• rest_and_clause_token_ : numeric::expression_parser::ArithmeticASTRestAndClause
• rest_expression_token_ : numeric::expression_parser::ArithmeticASTRestExpression
• rest_or_clause_token_ : numeric::expression_parser::ArithmeticASTRestOrClause
• rest_term_token_ : numeric::expression_parser::ArithmeticASTRestTerm
• restrict_access : options_class.Option
• restricted_access_ : utility::options::Option
• restrictions_ : utility::tag::XMLSchemaRestriction
• result : basic::ExecutionResult
• result_ : PerformanceBenchmark
• rho : decision_function , Solver::SolutionInfo , svm_model
• right_ : numeric::ClusteringTreeNode , numeric::DietNode< T >
• right_child_ : numeric::kdtree::KDNode
• ring_mm_ : DockGlycansProtocol
• ring_mover_ : DockGlycansProtocol
• rings_ : utility::graph::RingDetection< Graph >
• rms_ : CAtrace
• rmses : FragmentAssemblyMover
• rna_de_novo_protocol_ : BuildFullModel
• rna_fragment_monte_carlo_ : RNA_DeNovoJobQueen
• rna_params_ : RNA_DeNovoJobQueen
• rna_prot_erraser : erraser_option.erraser_option
• roc_curve_ : numeric::RocCurve
• roc_point_vector_ : numeric::RocCurve
• root1_ : numeric::Polynomial_1d
• root2_ : numeric::Polynomial_1d
• root_ : numeric::DiscreteIntervalEncodingTree< T > , numeric::kdtree::KDTree
• root_module : binder::Config
• rosetta_bin : erraser_option.erraser_option
• rosetta_database : erraser_option.erraser_option
• rosetta_folder : erraser_option.erraser_option
• rosetta_prefix : mutant_modeler.MutantModeler
• rosetta_script_ : XMLParseBenchmark
• rot_ : DockGlycansProtocol
• rotamer_prot_stats_ : PhProtocol
• rotate_info_ : LigandDockBench
• rotid_ : ScoreFragInfo
• rotidx_ : ScoreFragInfo
• rotlist_ : numeric::AxisRotationSampler , numeric::UniformRotationSampler
• rotsets_ : InteractionGraphPerformanceBenchmark
• row1 : PyMOL-RosettaServer.Matrix
• row2 : PyMOL-RosettaServer.Matrix
• row3 : PyMOL-RosettaServer.Matrix
• row_list_ : basic::database::insert_statement_generator::InsertGenerator
• run_local : mutant_modeler.MutantModeler