- s -

• s : basic::sampling::orientations::QuaternionGrid
• s1_ : ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename >
• s2_ : ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename >
• s3_ : ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename >
• s4_ : ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename >
• s5_ : ObjexxFCL::FArray6< typename >
• s_ : Base , utility::py::Value
• sampling_increment_ : zinc_stats::ZincStatisticGenerator
• sampling_range_ : zinc_stats::ZincStatisticGenerator
• sarray_ : ObjexxFCL::FArray< typename >
• sat_allow_ : ExposedStrandMover
• sc_bb_min_mover_ : zinc1_homodimer_design
• sc_bb_move_map_ : zinc1_homodimer_design
• sc_min_mover_ : zinc1_homodimer_design
• sc_move_map_ : zinc1_homodimer_design
• scaffold : APDBCMover
• scale_diag : numeric::nls::lm_control_struct
• schema_ : utility::tag::XMLValidatorImpl
• schema_has_been_set_ : utility::tag::XMLValidatorImpl
• schema_parser_context_ : utility::tag::XMLValidatorImpl
• schema_validator_ : utility::tag::XMLValidatorImpl
• score_ : numeric::RocPoint
• score_function_ : Minimize , NCMinimize
• score_type_ : ScoreEachBenchmark
• scorefunction_ : zinc2_homodimer_setup
• scorefxn : MinimizerBenchmark< sft, TScale > , pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
• scorefxn_ : BacksideHbondFinderMover , ExposedStrandMover , ExtractATD , FastRelaxPerformanceBenchmark , HDdesignMover , HDmakerMover , IAMover , InteractionGraphPerformanceBenchmark , ScoreEachBenchmark , supercharge
• scorefxn_a : HDdesignMover
• scorefxn_cst_ : CaToAllAtom
• scoreName : pyrosetta.EnergyMethod
• scores : pyrosetta.distributed.packed_pose.core.PackedPose
• scores_1b : FragmentAssemblyMover
• scores_2b : FragmentAssemblyMover
• scoreType : pyrosetta.EnergyMethod
• scoring_file : erraser_option.erraser_option
• sd : pep_coord_cst
• sdata : pyrosetta.io.silent_file_map.SilentFileEnergyAccessor , pyrosetta.io.silent_file_map.SilentFileMap , pyrosetta.io.silent_file_map.SilentFilePoseAccessor
• search_paths_ : basic::resource_manager::locator::FileSystemResourceLocator
• search_syn_pyrimidine_only_when_native_syn : erraser_option.erraser_option
• second_node_ind_ : utility::graph::LowMemEdge
• secondary_structs_ : apps::pilot::frankdt::Motif
• seconds : pyrosetta.distributed.utility.log.ProgressLogger
• seed_ : numeric::random::standard_RG
• semi_constructed_expression_ : numeric::expression_parser::ExpressionCreator
• sep : fmt::ArgJoin< Char, It >
• sep_ : fmt::internal::ThousandsSep
• sequence : pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
• sequence_ : utility::CSI_Sequence
• sequences_ : MPDomainAssembly
• set_ios_hook : pyrosetta.logging_support.PythonLoggingSink , test.T007_TracerIO.MyPyTracer
• setup_successful_ : ScoreEachBenchmark
• sf_ : DockGlycansProtocol
• sformat : numeric::random::mt19937_RG
• sformat_idx : numeric::random::mt19937_RG
• sfxn : mutant_modeler.MutantModeler
• sfxn_ : MPDomainAssembly , MyScoreMover , NBuriedUnsatsCalcultor
• shape_ : numeric::VoxelArray< _Float, _Value >
• shear_mover : ShearMoverBenchmark
• shear_mover_ : DockGlycansProtocol
• sheet_start_ : HDmakerMover
• sheet_stop_ : HDmakerMover
• shift_ : ObjexxFCL::FArray< typename >
• shift_pH_ : PhProtocol
• short : options_class.Option
• short_description_ : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• show_accessed_options_ : utility::options::OptionCollection
• show_unused_options_ : utility::options::OptionCollection
• shrinking : svm_parameter
• si : Solver_NU
• side_length : test.Workshop9_my_shapes.MySquare
• sigma : basic::sampling::orientations::QuaternionGrid
• sign : SVR_Q
• simulation_ : utility::SimulateMPI
• single_line_arrays_ : utility::json_spirit::Generator< Value_type, Ostream_type >
• size : Cache , fmt::internal::Value::StringValue< Char >
• size_ : basic::database::schema_generator::DbDataType , fmt::BasicStringRef< Char > , fmt::Buffer< T > , numeric::ClusteringTreeNode , numeric::kdtree::KDTree , numeric::MathMatrix< T > , numeric::MathNTensor< T, N > , numeric::MathTensor< T > , numeric::MathVector< T > , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::FArray< typename > , ObjexxFCL::FArraySection< typename > , ObjexxFCL::IndexRange , utility::graph::Array0< T > , utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• size_msg_ : utility::SimulateMPIMessage
• sizes_msg_ : utility::SimulateMPIMessage
• skip_hd_docking_ : HDdesignMover
• skip_minimize : erraser_option.erraser_option
• skip_scoring_ : MyScoreMover
• skip_single_res_minimize : erraser_option.erraser_option
• skipping_requested_ : binder::Binder
• slice_nearby : erraser_option.erraser_option
• slide_together_ : LigandDockBench
• slider_ : DockGlycansProtocol
• slope : numeric::interpolation::spline::LinearFunction
• small_mover : SmallMoverBenchmark
• small_mover_ : DockGlycansProtocol
• so3_ : numeric::fourier::SHT
• socket : PyMOL-RosettaServer.PR_UDPServer
• softrep_min_mover_ : zinc1_homodimer_design
• softrep_sym_scorefxn_ : zinc1_homodimer_design
• sol_mult_ : DockGlycansProtocol
• source_ : ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6P< typename >
• source_residues : pyrosetta.protocols.structure_search.StructureSearchManager
• sources_ : ObjexxFCL::internal::ObserverGraph
• spec_ : fmt::internal::ArgFormatterBase< Impl, Char, Spec >
• spline_interpolator_ : numeric::interpolation::Histogram< typename, typename >
• split_axis_ : numeric::kdtree::KDNode
• sql_command_ : basic::resource_manager::locator::DatabaseResourceLocator
• src_ : utility::SimulateMPIMessage
• src_2_dst_ : utility::subset_mapping
• sstring : fmt::internal::Value
• stack_ : binder::IncludeSet , utility::json_spirit::Semantic_actions< Value_type, Iter_type >
• start_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline , numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 > , numeric::interpolation::spline::TricubicSpline , numeric::MultiDimensionalHistogram
• start_clock_ : basic::DynamicProfileThis
• start_from_ : LigandDockBench
• start_pose : DockingBenchmark< dock, TScale > , MinimizerBenchmark< sft, TScale >
• start_res_list_ : ExposedStrandMover
• start_time : pyrosetta.distributed.utility.log.ProgressLogger
• starting_centroid_pose_ : zinc1_homodimer_design
• starting_fullatom_pose_ : zinc1_homodimer_design
• starting_monomer_pose_ : zinc1_homodimer_design
• starting_pose_ : UBQ_E2Mover , UBQ_GTPase_disulfide_Mover
• STARTING_RAMP_DOWN_FACTOR : DockGlycansProtocol
• STARTING_RAMP_UP_FACTOR : DockGlycansProtocol
• state_ : ObjexxFCL::FArrayInitializer< typename, class > , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• states_ : numeric::fourier::kiss_fftnd_state
• static_int_ : utility::py::PyExitCallback
• static_string_ : utility::py::PyExitCallback
• static_string_const_ : utility::py::PyExitCallback
• status_ : numeric::RocPoint
• steepness_ : ScoreFragmentSetMover
• step_ : numeric::interpolation::Histogram< typename, typename >
• stepbound : numeric::nls::lm_control_struct
• stop_level_ : utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• str_ : basic::datacache::CacheableString , fmt::FormatInt , fmt::StrFormatSpec< Char > , ObjexxFCL::Cstring , ObjexxFCL::Fstring
• strand_def_vector_ : ExposedStrandMover
• strand_pose_nums_ : ExposedStrandMover
• stream_ : basic::resource_manager::locator::FileStream , basic::resource_manager::locator::NullStream , basic::resource_manager::locator::StringResourceStream
• strict_ : utility::Bound< typename >
• string : fmt::internal::Value
• string_ : utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >
• string_msg_ : utility::SimulateMPIMessage
• string_value_ : utility::py::Base
• string_vectors_ : utility::options::OptionCollection
• strings_ : utility::options::OptionCollection
• struct_filename_ : ExposedStrandMover
• structure_feature_ : DatabaseIOBenchmark
• sub_ : ObjexxFCL::Fstring
• subelement_behavior_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• subelement_sets_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• subelements_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• substate_ : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftr_state , numeric::fourier::kiss_fftsplit_state
• substitution_group_ : utility::tag::XMLSchemaElement
• super_twiddles_ : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftr_state
• surface_res_ : supercharge
• SV : svm_model
• sv_coef : svm_model
• sv_indices : svm_model
• svm_model_ : utility::libsvm::Svm_rosetta
• svm_type : svm_parameter
• sym_minmover_ : zinc2_homodimer_design
• sym_minmover_bb_ : zinc2_homodimer_design
• sym_minmover_sc_ : zinc2_homodimer_design
• sym_pack_mover_ : zinc1_homodimer_design , zinc2_homodimer_design
• sym_rottrials_mover_ : zinc1_homodimer_design
• sym_scorefxn_ : zinc1_homodimer_design