- t -

• t() : in::file
• TAB() : ObjexxFCL
• table_exists() : basic::database
• taboo_in_fa() : loops
• taboo_sampling() : loops
• tag() : matdes , resample , rna::denovo , rot_anl
• tagfile() : in::file
• taglist() : willmatch
• tags() : in::file
• tags1() : stepwise
• tags2() : stepwise
• tail_mode() : krassk
• tail_mode_name() : krassk
• tail_output_file_name() : krassk
• TailSegment() : TailSegment
• talos_cs() : in::file
• talos_phi_psi() : in::file
• target() : hotspot
• target_aa() : motifs
• target_dist() : hotspot
• target_dna_defs() : motifs
• target_res() : hotspot
• target_residues() : in
• target_xyz() : rna::denovo::out
• targetdir() : evolution
• task_operation_name_pattern() : utility::tag
• task_operations() : task_operations
• TBMB_constraints_energy_filter_multiplier() : cyclic_peptide
• TBMB_positions() : cyclic_peptide
• TBMB_sidechain_distance_filter_multiplier() : cyclic_peptide
• tcr_template_db_path() : tcrmodel
• tcrmodel() : tcrmodel
• temp_final() : MonteCarlo
• temp_initial() : MonteCarlo
• temperature() : abinitio , ddg , docking , loops::ccd , magnesium::montecarlo , remodel::RemodelLoopMover , rigid , rna::denovo , smhybrid , stepwise::monte_carlo
• template_argument_to_string() : binder
• template_identity_cutoff() : tcrmodel
• template_pdb() : in::file
• template_scores() : cluster
• template_silent() : in::file
• template_specialization() : binder
• templates() : templates
• temps() : recces
• tensor_weight() : rdc
• terminal_res() : full_model::rna
• termini() : mp
• test() : PyMOL_demo , pyrosetta::tests
• test_all_moves() : stepwise
• test_bondangle() : numeric::kinematic_closure
• test_bridgeObjects() : numeric::kinematic_closure
• test_chainParams() : numeric::kinematic_closure
• test_chainTORS() : numeric::kinematic_closure
• test_chainXYZ() : numeric::kinematic_closure
• test_cross() : numeric::kinematic_closure
• test_cycles() : run
• test_dixon() : numeric::kinematic_closure
• test_encapsulation() : stepwise
• test_eucDistance() : numeric::kinematic_closure
• test_frame() : numeric::kinematic_closure
• test_if_schema_is_valid() : utility::tag
• test_method() : test::T120_Bindings_Utility
• test_name() : self-test
• test_point_value2() : numeric::kinematic_closure
• test_polyProduct2x2() : numeric::kinematic_closure
• test_polyProduct4sq() : numeric::kinematic_closure
• test_polyProduct4x2() : numeric::kinematic_closure
• test_polyProduct4x4() : numeric::kinematic_closure
• test_polyProduct6x6() : numeric::kinematic_closure
• test_property() : test::T120_Bindings_Utility
• test_rotateX() : numeric::kinematic_closure
• test_scpn() : numeric::kinematic_closure
• test_sincos() : numeric::kinematic_closure
• test_torsion() : numeric::kinematic_closure
• test_triangle() : numeric::kinematic_closure
• test_triaxialCoefficients() : numeric::kinematic_closure
• testing() : AnchoredDesign::testing , testing
• tether_jump() : stepwise::rna
• tether_ligand() : docking::ligand
• tether_to_closest_res() : magnesium
• tetrahedral_metal_constraints_energy_filter_multiplier() : cyclic_peptide
• tetrahedral_metal_positions() : cyclic_peptide
• tetrahedral_metal_sidechain_distance_filter_multiplier() : cyclic_peptide
• tgt_amino() : pose_metrics::shobuns
• tgt_atom() : pose_metrics::shobuns
• tgt_res() : pose_metrics::shobuns
• thermal_sampling() : recces::thermal_sampling
• thickness() : membrane , mp , mp::viewer , mp::visualize
• thinout_factor() : cluster
• thorough() : relax
• thousands_sep() : fmt::internal
• thread_unaligned() : james
• threads() : gpu , packstat
• threads_per_slave() : cyclic_peptide
• threadsc() : threadsc
• three_fold_symmetry_90_210_330() : make_rot_lib
• threshold() : hotspot
• threshold_for_boost_closure() : remodel::RemodelLoopMover
• throw_error() : utility::json_spirit
• throw_exception() : boost
• tilt() : docking
• tilt1_center() : docking
• tilt2_center() : docking
• tilt_angle() : mp::benchmark::tilt_angle
• timer() : loops , run
• timestamp() : utility
• timestamp_millis() : utility
• timestamp_millis_short() : utility
• timestamp_short() : utility
• tm_alpha() : mp::lipid_acc
• TM_pose_number() : mp::assembly
• TMA_constraints_energy_filter_multiplier() : cyclic_peptide
• TMA_positions() : cyclic_peptide
• TMA_sidechain_distance_filter_multiplier() : cyclic_peptide
• TMprojection() : mp
• to_degrees() : numeric::conversions , numeric::kinematic_closure::radians
• to_dict() : pyrosetta::distributed::packed_pose::core
• to_hex_char() : utility::json_spirit
• to_json() : numeric
• to_output_record() : pyrosetta::distributed::io
• to_packed() : pyrosetta::distributed::packed_pose::core
• to_pdbstring() : pyrosetta::distributed::io
• to_pose() : pyrosetta::distributed::packed_pose::core
• to_radians() : numeric::conversions , numeric::kinematic_closure::radians
• to_silent() : pyrosetta::distributed::io
• to_str() : utility::json_spirit
• to_string() : numeric::interpolation , utility
• to_string< char >() : utility
• to_structured_array() : pyrosetta::utility::array
• to_unsigned() : fmt::internal
• token_type_name() : numeric::expression_parser
• tolerance() : loops::ccd , pb_potential
• top_designs() : antibody::design
• topN() : templates::cst , templates::fragsteal
• topological_sort() : utility::graph
• topology_file() : jumps
• topology_rank_cutoff() : templates
• torsion() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• torsion_bin_probs() : in::file
• torsion_thresholds() : james
• torsionsMCM() : flexPepDocking
• total_energies_array() : pyrosetta::bindings::energies
• total_energy_cutoff() : cyclic_peptide
• total_weight() : rdc
• trajectory() : backrub , coupled_moves
• trajectory_file() : coupled_moves
• trajectory_gz() : backrub , coupled_moves
• trajectory_stride() : backrub , coupled_moves
• trans_mag_smooth() : fold_and_dock
• trans_magnitude() : enzdes
• transaction_mode_from_name() : utility::sql_database
• transform() : mp::transform
• transform_into_membrane() : mp::setup
• transform_percentile() : numeric::kdtree
• transform_percentile_single_pt() : numeric::kdtree
• transition_threshold() : canonical_sampling::sampling
• translate() : pyrosetta::bindings::pose
• translation() : rigid
• translation_mag() : recces::base_pair
• transpose_product() : numeric
• transpose_so3() : numeric::fourier
• transposed() : ObjexxFCL
• treat_residues_in_these_chains_as_separate_chemical_entities() : in::file
• tree_based_min_pack() : carbohydrates::glycan_sampler
• trg_anchor() : threadsc
• trg_chain() : threadsc
• trg_first_resid() : threadsc
• triangle() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• triaxialCoefficients() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• trigonal_planar_metal_constraints_energy_filter_multiplier() : cyclic_peptide
• trigonal_planar_metal_positions() : cyclic_peptide
• trigonal_planar_metal_sidechain_distance_filter_multiplier() : cyclic_peptide
• trigonal_pyramidal_metal_constraints_energy_filter_multiplier() : cyclic_peptide
• trigonal_pyramidal_metal_positions() : cyclic_peptide
• trigonal_pyramidal_metal_sidechain_distance_filter_multiplier() : cyclic_peptide
• trim() : ObjexxFCL , utility
• trim_proportion() : wum
• trim_whitespace() : ObjexxFCL
• trimmed() : ObjexxFCL
• trimmed_compare() : utility
• trimmed_whitespace() : ObjexxFCL
• truefalseoption() : basic::options
• truncate_and_serialize_xyz_vector() : numeric
• trytry_ifstream_open() : utility::file
• trytry_ofstream_open() : utility::file
• turn_off_rna_chem_map_during_optimize() : stepwise::rna
• tweak_sxfn() : docking::ligand
• two_body() : rotamerdump
• two_chain_tree() : remodel
• two_fold_symmetry_0_180() : make_rot_lib
• two_fold_symmetry_135_315() : make_rot_lib
• two_ubiquitins() : chemically_conjugated_docking
• twoprime() : full_model
• type() : frags::contacts
• type_of() : ObjexxFCL
• type_of< char >() : ObjexxFCL
• type_of< std::string >() : ObjexxFCL
• typename_from_type_decl() : binder