- v -

• validate() : pyrosetta::distributed::tasks::rosetta_scripts
• validate_and_exit() : parser
• validate_xml_against_xsd() : utility::tag
• vall() : in::file
• vall_file() : loops , phil
• vall_torsions() : rna::denovo
• value_pH() : pH
• vary_cutpoints() : AnchoredDesign
• vary_frag_size() : templates
• vary_geometry() : rna
• vary_loop_length_frequency() : stepwise::monte_carlo
• vary_polar_hydrogen_geometry() : stepwise::polar_hydrogens
• vdw() : remodel
• VDW_atr_rep_screen() : stepwise::rna
• vdw_delta() : fast_loops
• VDW_rep_alignment_RMSD_CUTOFF() : stepwise::rna
• VDW_rep_delete_matching_res() : stepwise::rna
• VDW_rep_optimize_memory_usage() : stepwise::rna
• VDW_rep_screen_include_sidechains() : rna::denovo
• VDW_rep_screen_info() : stepwise::rna
• VDW_rep_screen_physical_pose_clash_dist_cutoff() : stepwise::rna
• VDW_weight() : AnchoredDesign::testing
• vdw_weight_stage1() : abinitio
• vec_diff() : measure_params
• vec_distance() : numeric::kdtree
• Vector1() : pyrosetta
• vector_normal_to_ring_plane_of_best_fit() : numeric::geometry
• vector_of_xyzvectors_to_FArray() : numeric
• vectorDiff() : numeric::kinematic_closure
• vectorsEqual() : numeric::kinematic_closure
• verbose() : basic::options , nmr::score , rescore
• VERBOSE() : stepwise
• verbose_sampler() : stepwise
• verbose_scores() : stepwise::monte_carlo
• version() : pyrosetta , run
• vicinity_degree() : loops
• vicinity_sampling() : loops
• view() : antibody::design , docking , flxbb , membrane , parser , view
• viewer() : mp::viewer
• viol() : constraints
• viol_level() : constraints
• viol_type() : constraints
• violation_skip_basis() : fold_cst
• violation_skip_ignore() : fold_cst
• vipReportFile() : cp
• virtual_anchor() : rna::denovo
• virtual_nterm() : smhybrid
• virtual_res() : full_model
• virtual_res_files() : smhybrid
• virtual_sugar_do_minimize() : stepwise::rna
• virtual_sugar_keep_base_fixed() : stepwise::rna
• virtual_sugar_legacy_mode() : stepwise::rna
• virtual_sugar_res() : full_model
• virtualize_free_moieties_in_native() : stepwise
• virtualize_packable_moieties_in_screening_pose() : stepwise
• visit() : utility::graph
• visualize() : mp::visualize
• voids_penalty_energy_cone_distance_cutoff() : score
• voids_penalty_energy_cone_dotproduct_cutoff() : score
• voids_penalty_energy_containing_cones_cutoff() : score
• voids_penalty_energy_disabled_except_during_packing() : score
• voids_penalty_energy_voxel_grid_padding() : score
• voids_penalty_energy_voxel_size() : score
• VOLUME_USED() : platform::file