iterative_design.cc File Reference

#include <devel/init.hh>
#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ResidueType.hh>
#include <core/conformation/Residue.hh>
#include <core/kinematics/Jump.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <basic/options/option.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/loops/LoopMover_CCD.hh>
#include <protocols/viewer/viewers.hh>
#include <protocols/jobdist/Jobs.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/ProteinSilentStruct.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/silent.fwd.hh>
#include <core/io/silent/SilentFileData.fwd.hh>
#include "core/scoring/packstat/compute_sasa.hh"
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/pack_rotamers.hh>
#include <basic/Tracer.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/file/FileName.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <numeric/xyzVector.hh>
#include <utility/file/gzip_util.hh>
#include <fstream>
#include <iostream>
#include <utility>
#include <string>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <ObjexxFCL/string.functions.hh>
#include <core/import_pose/import_pose.hh>

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.iterative_design")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cerr, utility::io::oc::cout, numeric::xyzVector< T >::distance(), test.T009_Exceptions::e, utility::file::file_exists(), lactamize::filename, fold_tree_from_loops(), getline(), create_a3b_hbs::i, basic::init(), enumerate_junctions::int, subloop_histogram::iterator, create_a3b_hbs::j, basic::options::OptionKeys::loops::keep_natro, in::file::l(), basic::options::OptionKeys::in::file::list, basic::options::OptionKeys::recces::thermal_sampling::loop_residues, basic::options::OptionKeys::cluster::loops, beta_nonlocal::mm, option, options, predPRE::pdbname, make_symmdef_file_denovo::pos, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, out::prefix(), basic::options::OptionKeys::loops::refine_design_iterations, res, ObjexxFCL::right_string_of(), in::file::s(), oop_conformations::scorefxn, sfd, out::file::silent(), basic::options::OptionKeys::cutoutdomain::start, utility::string_split(), vancomycin::task, TR, ObjexxFCL::unique(), and basic::options::OptionKeys::inout::dbms::user.

Variable Documentation

TR

basic::Tracer TR("apps.iterative_design") ( "apps.iterative_design"  )

static

Referenced by main().