frag2profile.cc File Reference

#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/FrameList.hh>
#include <core/fragment/FrameIterator.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/scoring/rms_util.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <devel/init.hh>
#include <ObjexxFCL/format.hh>
#include <fstream>
#include <cmath>

Classes
class	ThisApplication

Typedefs
typedef core::Size	Size
typedef std::string	String
typedef std::map< Size, Size >::iterator	M_iter

Functions
bool	compare (M_iter const &a, M_iter const &b)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("frag2profile")

Detailed Description

Author

Nobuyasu Koga

Typedef Documentation

M_iter

typedef std::map< Size, Size >::iterator M_iter

Size

typedef core::Size Size

String

typedef std::string String

Function Documentation

compare()

bool compare	(	M_iter const &	a,
		M_iter const &	b
	)

References a, and compute_difference::b.

Referenced by already_minimized(), basic_string_view< Char >::compare(), detail::fallback_format(), main(), print_ddgs(), print_verbose_ddgs(), and utility::keys::ClassKeyVector< K, T, C >::sort().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, compare(), count, test.T009_Exceptions::e, create_a3b_hbs::f, ObjexxFCL::format::F(), lactamize::filename, test.Workshop4test::fragset, numeric::kinematic_closure::frame(), score_vs_rmsd::frames, create_a3b_hbs::i, ObjexxFCL::format::I(), test.T110_numeric::I, basic::init(), create_a3b_hbs::j, create_a3b_hbs::k, extract_by_sidechain_sasa_score::l, numeric::log(), basic::options::OptionKeys::out::file::o, option, erraser_single_res_analysis::out, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, ObjexxFCL::pow(), ThisApplication::register_options(), res, ObjexxFCL::format::RJ(), average_rmsds::rmsd, runtime_assert, docking::s, basic::options::OptionKeys::cutoutdomain::start, create_a3b_hbs::test_pose, and TR.

Variable Documentation

TR

basic::Tracer TR("frag2profile") ( "frag2profile"  )

static

Referenced by main().