transform_loodo.cc File Reference

#include <devel/init.hh>
#include <basic/options/keys/loodo.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/Pose.hh>
#include <core/kinematics/Stub.hh>
#include <protocols/sic_dock/util.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzMatrix.hh>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
#include <basic/Tracer.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <boost/algorithm/string.hpp>
#include <boost/lexical_cast.hpp>

Typedefs
using	Vector = numeric::xyzVector< core::Real >
using	Matrix = numeric::xyzMatrix< core::Real >

Functions
core::kinematics::Stub	parse_into_stub (utility::vector1< core::Real > const &in_vec)
int	main (int argc, char *argv[])
	Main method. More...

Variables
basic::Tracer	TR ("apps.public.loop_modeling.transform_loodo")

Typedef Documentation

Matrix

using Matrix = numeric::xyzMatrix<core::Real>

Vector

using Vector = numeric::xyzVector<core::Real>

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

Main method.

References basic::citation_manager::Application, argv, basic::options::OptionKeys::loodo::cap, basic::options::OptionKeys::loodo::caphit_rt_file, basic::options::OptionKeys::cm::cm, test.T009_Exceptions::e, create_a3b_hbs::f, utility::SingletonBase< CitationManager >::get_instance(), getline(), create_a3b_hbs::i, basic::init(), ObjexxFCL::is_any_of(), line, docking::native_pose, basic::options::option, parse_into_stub(), clean_pdb_keep_ligand::pdbfile, pyrosetta.distributed.io::pose_from_file, binder::split(), stub(), utility_exit_with_message, and xform_pose_rev().

parse_into_stub()

core::kinematics::Stub parse_into_stub

(

utility::vector1< core::Real > const &

in_vec

)

References count, create_a3b_hbs::i, create_a3b_hbs::j, create_a3b_hbs::k, utility_exit_with_message, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("apps.public.loop_modeling.transform_loodo")

(

"apps.public.loop_modeling.transform_loodo"

)