concatenate_poses.cc File Reference

concatenates poses together end-to-end while transforming them to avoid chainbreaks More...

#include <apps/pilot/frankdt/concatenate_poses.hh>
#include <basic/Tracer.hh>
#include <devel/init.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ChemicalManager.hh>
#include <algorithm>
#include <regex>
#include <basic/options/option.hh>
#include <basic/options/keys/sewing.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/inout.OptionKeys.gen.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/conformation/Residue.hh>
#include <core/import_pose/import_pose.hh>
#include <iostream>
#include <string>
#include <stdlib.h>
#include <core/conformation/Atom.hh>
#include <numeric/random/random.hh>
#include <numeric/HomogeneousTransform.hh>

Namespaces
	apps
	apps::pilot
	apps::pilot::frankdt

Functions
int	apps::pilot::frankdt::main (int argc, char *argv[])
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.frankdt.concatenate_poses")
FileOptionKey const	component_file_name ("component_file")
FileOptionKey const	immobile_domain ("immobile_domain")
FileOptionKey const	output_filename ("output_filename")
FileOptionKey const	binding_partner ("binding_partner")

Detailed Description

concatenates poses together end-to-end while transforming them to avoid chainbreaks

Author

frankdt (frank.nosp@m.dt@e.nosp@m.mail..nosp@m.unc..nosp@m.edu)

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, and apps::pilot::frankdt::main().

Variable Documentation

binding_partner

FileOptionKey const binding_partner("binding_partner")

(

"binding_partner"

)

Referenced by apps::pilot::frankdt::main().

component_file_name

FileOptionKey const component_file_name("component_file")

(

"component_file"

)

Referenced by apps::pilot::frankdt::main().

immobile_domain

FileOptionKey const immobile_domain("immobile_domain")

(

"immobile_domain"

)

Referenced by apps::pilot::frankdt::main().

output_filename

FileOptionKey const output_filename("output_filename")

(

"output_filename"

)

Referenced by IAMover::apply(), HBondReporter::apply(), filter_combine_long_loop(), get_options(), main(), apps::pilot::frankdt::main(), zinc_stats::ZincStatisticGenerator::output_file(), and symmetrize_map().

TR

basic::Tracer TR("apps.pilot.frankdt.concatenate_poses") ( "apps.pilot.frankdt.concatenate_poses"  )

static

Referenced by apps::pilot::frankdt::main().