- f -

• f : core::scoring::fiber_diffraction::Hankel
• f0 : core::scoring::fiber_diffraction::Hankel
• f00_ : core::optimization::DerivCheckDataPoint , core::optimization::DOF_DataPoint
• f11_ : core::optimization::DerivCheckDataPoint , core::optimization::DOF_DataPoint
• F1_ : core::optimization::DOF_Node
• f1_ : core::scoring::DerivVectorPair
• f1ij_ : core::scoring::CSA , core::scoring::DC
• f22_ : core::optimization::DerivCheckDataPoint , core::optimization::DOF_DataPoint
• F2_ : core::optimization::DOF_Node
• f2_ : core::scoring::DerivVectorPair
• f2c : core::scoring::electron_density::ElectronDensity , core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• f2c_ : protocols::cryst::Spacegroup , protocols::cryst::WallpaperGroup
• f2ij_ : core::scoring::CSA , core::scoring::DC
• f3ij_ : core::scoring::CSA
• F_aa1 : core::scoring::motif::RPM_FilterStats
• F_aa2 : core::scoring::motif::RPM_FilterStats
• F_coorderr : core::scoring::motif::RPM_FilterStats
• F_dssp1 : core::scoring::motif::RPM_FilterStats
• F_dssp2 : core::scoring::motif::RPM_FilterStats
• F_faatr : core::scoring::motif::RPM_FilterStats
• F_faatr_or_hb : core::scoring::motif::RPM_FilterStats
• F_faatr_or_hbbb : core::scoring::motif::RPM_FilterStats
• F_hb_bb : core::scoring::motif::RPM_FilterStats
• F_hb_bb_sc : core::scoring::motif::RPM_FilterStats
• F_hb_sc : core::scoring::motif::RPM_FilterStats
• F_lig : core::scoring::motif::RPM_FilterStats
• F_max_seqsep : core::scoring::motif::RPM_FilterStats
• F_maxdist2 : core::scoring::motif::RPM_FilterStats
• F_mindist2 : core::scoring::motif::RPM_FilterStats
• F_no_hb_bb : core::scoring::motif::RPM_FilterStats
• F_nodisulf : core::scoring::motif::RPM_FilterStats
• F_noloops : core::scoring::motif::RPM_FilterStats
• F_not_restype : core::scoring::motif::RPM_FilterStats
• F_not_restype_one : core::scoring::motif::RPM_FilterStats
• F_occupancy : core::scoring::motif::RPM_FilterStats
• F_oneloop : core::scoring::motif::RPM_FilterStats
• F_pdb : core::scoring::motif::RPM_FilterStats
• F_restype : core::scoring::motif::RPM_FilterStats
• F_restype1 : core::scoring::motif::RPM_FilterStats
• F_restype2 : core::scoring::motif::RPM_FilterStats
• F_restype_one : core::scoring::motif::RPM_FilterStats
• F_score : core::scoring::motif::RPM_FilterStats
• F_seqsep : core::scoring::motif::RPM_FilterStats
• F_ss1 : core::scoring::motif::RPM_FilterStats
• F_ss2 : core::scoring::motif::RPM_FilterStats
• F_type_BB_BB : core::scoring::motif::RPM_FilterStats
• F_type_BB_PH : core::scoring::motif::RPM_FilterStats
• F_type_BB_PO : core::scoring::motif::RPM_FilterStats
• F_type_PH_PO : core::scoring::motif::RPM_FilterStats
• F_type_SC_BB : core::scoring::motif::RPM_FilterStats
• F_type_SC_PH : core::scoring::motif::RPM_FilterStats
• F_type_SC_PO : core::scoring::motif::RPM_FilterStats
• F_type_SC_SC : core::scoring::motif::RPM_FilterStats
• F_uniformfrag : core::scoring::motif::RPM_FilterStats
• FA_ : core::scoring::ResidualDipolarCoupling
• fa_atr_ : core::scoring::motif::ResPairMotif
• fa_atr_bb_ : core::scoring::motif::ResPairMotif
• fa_atr_sc_bb_ : core::scoring::motif::ResPairMotif
• fa_atr_weight_ : protocols::stepwise::screener::PartitionContactScreener
• fa_attr : protocols::features::helixAssembly::FragmentPair
• fa_center_ : core::scoring::Membrane_FAEmbed
• fa_cfg_file_ : core::scoring::saxs::SAXSEnergy
• fa_constraints_ : protocols::constraints_additional::ConstraintEvaluator , protocols::topology_broker::ConstraintClaimer
• fa_cst_fn_ : protocols::hybridization::HybridizeProtocol
• fa_depth_ : core::scoring::Membrane_FAEmbed
• fa_disulfide_potential_ : core::scoring::ScoringManager
• fa_dock_slide_into_contact_ : protocols::docking::DockingPrepackProtocol
• fa_dun_cutoff_ : protocols::match::upstream::BuildSet
• fa_dun_danger_ : protocols::fldsgn::filters::CoreDunbrackFilter
• fa_dun_dev_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• fa_dun_rot_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• fa_dun_semi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• fa_dun_tot_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• fa_filename_ : protocols::topology_broker::ConstraintClaimer
• fa_fraction : protocols::features::helixAssembly::FragmentPair
• fa_mbenv_weight_ : core::scoring::membrane::FaMPEnvEnergy , core::scoring::methods::Fa_MbenvEnergy
• fa_mbsolv_weight_ : core::scoring::methods::Fa_MbsolvEnergy
• Fa_Membed_update_ : core::scoring::Membrane_FAEmbed
• fa_penalty_ : core::scoring::Membrane_FAEmbed
• fa_pose_ : protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure
• fa_proj_ : core::scoring::membrane::FaMPEnvEnergy , core::scoring::membrane::FaMPSolvEnergy , core::scoring::Membrane_FAEmbed
• fa_proj_coord_ : core::scoring::membrane::FaMPEnvEnergy , core::scoring::Membrane_FAEmbed
• fa_proj_deriv_ : core::scoring::membrane::FaMPEnvEnergy , core::scoring::Membrane_FAEmbed
• fa_rep_cut_ : protocols::matdes::BuildingBlockInterfaceOperation
• fa_rep_weight_ : protocols::stepwise::screener::PartitionContactScreener
• fa_score_ : protocols::abinitio::IterativeBase
• fa_score_patch_ : protocols::abinitio::IterativeBase
• fa_scorefxn_ : protocols::antibody_legacy::CDRH3Modeler , protocols::comparative_modeling::LoopRelaxMover , protocols::grafting::AnchoredGraftMover , protocols::hybridization::CartesianSampler , protocols::hybridization::HybridizeProtocol , protocols::hybridization::MRMover , protocols::rbsegment_relax::AutoRBMover , protocols::relax::CentroidRelax , protocols::seeded_abinitio::CloseFold , protocols::sewing::AssemblyMover , protocols::stepwise::legacy::modeler::protein::StepWiseProteinMinimizer
• fa_weight_ : core::scoring::membrane::FaMPSolvEnergy
• fa_z_position_ : core::scoring::membrane::FaMPEnvEnergy , core::scoring::membrane::FaMPSolvEnergy
• facet_alpha_ : protocols::match::Bool3DGridKinemageWriter
• facet_color_ : protocols::match::Bool3DGridKinemageWriter
• facet_master_ : protocols::match::Bool3DGridKinemageWriter
• factor_ : core::scoring::dna::TorsionFourierComponent , core::scoring::saxs::DistanceHistogram
• factorA_ : protocols::simple_moves::BBConRotMover , protocols::simple_moves::BBGaussianMover
• factorB_ : protocols::simple_moves::BBConRotMover , protocols::simple_moves::BBGaussianMover
• factorC_ : protocols::simple_moves::BBConRotMover
• factors_ : protocols::scoring::methods::saxs::PDDFEnergy
• factory_ : protocols::flexpack::FlexPacker , protocols::frag_picker::scores::AtomPairConstraintsScore , protocols::frag_picker::scores::DihedralConstraintsScore , protocols::frag_picker::scores::InterbondAngleScore , protocols::metal_interface::ZincHeterodimerMover , protocols::simple_moves::BoltzmannRotamerMover , protocols::simple_moves::GenericMonteCarloMover , protocols::simple_moves::RotamerTrialsMinMover , protocols::simple_moves::RotamerTrialsMover , protocols::simple_moves::symmetry::TaskAwareSymMinMover , protocols::simple_moves::TaskAwareMinMover
• facts_potential_ : core::scoring::ScoringManager
• FACTSrsdtypemap_ : core::scoring::FACTSPotential
• fadd : core::scoring::APBSConfig
• fade_ : core::scoring::rna::RNA_LowResolutionPotential
• fade_alpha_ap_ : core::scoring::rna::RNA_TorsionPotential
• fade_alpha_sc_minus_ : core::scoring::rna::RNA_TorsionPotential
• fade_alpha_sc_plus_ : core::scoring::rna::RNA_TorsionPotential
• fade_delta_north_ : core::scoring::rna::RNA_SugarCloseEnergy , core::scoring::rna::RNA_TorsionPotential
• fade_delta_south_ : core::scoring::rna::RNA_SugarCloseEnergy , core::scoring::rna::RNA_TorsionPotential
• fade_energy_ : core::scoring::hbonds::HBondOptions
• fade_hbond_ : core::scoring::elec::GroupElec
• fade_param1_ : core::scoring::elec::GroupElec
• fade_param2_ : core::scoring::elec::GroupElec
• fade_type_ : core::scoring::elec::GroupElec
• fade_width_ : protocols::electron_density::ScaleMapIntensities
• fade_zone_ : core::scoring::func::FadeFunc
• fafilter_ : protocols::loophash::LoopHashMoverWrapper
• fail_on_constraints_missing_ : protocols::enzdes::AddOrRemoveMatchCsts
• fake_working_moving_suite : protocols::stepwise::modeler::rna::InternalWorkingResidueParameter
• fallback_resource_descriptions_created_ : protocols::jd2::JD2ResourceManager
• fallback_strategy_ : protocols::antibody::design::CDRSeqDesignOptions
• false_behavior_ : protocols::toolbox::task_operations::StoreCompoundTaskMover
• false_movemap_ : protocols::forge::remodel::RemodelLoopMover , protocols::loops::loop_mover::LoopMover
• false_mover_ : protocols::moves::IfMover
• farray_coord_ptr_ : protocols::canonical_sampling::mc_convergence_checks::TransferBuffer
• fasol_cubic_poly1_close : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly1_close_flat : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly1_far : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly2_close : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly2_close_flat : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly2_far : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly_close : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly_close_end : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly_close_flat : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly_close_start : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly_far : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly_far_xhi_ : core::scoring::etable::Etable
• fasol_cubic_poly_far_xlo_ : core::scoring::etable::Etable
• fasol_final_weight : core::scoring::etable::EtableParamsOnePair
• fast_ : protocols::idealize::IdealizeMover , protocols::stepwise::sampler::rna::RNA_NucleosideStepWiseSampler , protocols::stepwise::sampler::rna::RNA_SuiteStepWiseSampler
• fast_build_ : protocols::forge::remodel::RemodelMover::instruction_flags
• fast_calc_ : protocols::simple_filters::RotamerBoltzmannWeight
• fast_full_atom_VDW_repulsion_screen : protocols::stepwise::modeler::rna::StepWiseRNA_CountStruct
• fast_relax_rounds_ : protocols::cyclic_peptide_predict::SimpleCycpepPredictApplication
• fast_scan_ : protocols::farna::movers::RNA_LoopCloser
• fasta2template_ : protocols::comparative_modeling::ThreadingJob
• fastdens_perres_weights_ : core::scoring::methods::EnergyMethodOptions
• fastdens_score : core::scoring::electron_density::ElectronDensity
• fastgrid : core::scoring::electron_density::ElectronDensity
• fastorigin : core::scoring::electron_density::ElectronDensity
• fastrelax_ : protocols::loophash::LoopHashMoverWrapper
• favor_bonus_ : protocols::simple_moves::ResidueTypeConstraintMover
• favor_native_bonus_ : core::scoring::constraints::ResidueTypeConstraint
• favor_native_constraints_ : protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver
• favor_non_native_bonus_ : core::scoring::constraints::NonResidueTypeConstraint
• favorable_energies : protocols::vip::VIP_Mover
• favorable_mutations : protocols::vip::VIP_Mover
• favorable_positions : protocols::vip::VIP_Mover
• favorable_residues : protocols::vip::VIP_Mover
• favored_rotamer_numbers_ : core::pack::dunbrack::RotamerConstraint
• favored_rotamers_ : core::pack::dunbrack::RotamerConstraint
• fc_bg_ : core::pack::interaction_graph::exposed_hydrophobic_data
• fc_exp_hphobe_djs_offsets_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• fc_n_exp_hphobes_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• fc_neighbor_map : core::pack::interaction_graph::SurfaceNode< V, E, G >
• fc_node_alt_state_ : core::pack::interaction_graph::SurfaceBackgroundEdge< V, E, G >
• fc_node_curr_state_ : core::pack::interaction_graph::SurfaceBackgroundEdge< V, E, G >
• fc_nodes_near_rotsub_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• fc_nodes_near_rotsub_bool_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• fcen10_ : core::scoring::CenListInfo , core::scoring::SigmoidWeightedCenList< T >
• fcen12_ : core::scoring::CenListInfo , core::scoring::SigmoidWeightedCenList< T >
• fcen6_ : core::scoring::CenListInfo , core::scoring::SigmoidWeightedCenList< T >
• fcenter : core::scoring::APBSConfig
• Fdensity : core::scoring::electron_density::ElectronDensity
• feature_types_ : protocols::comparative_modeling::features::ResidueFeatureFactory
• features_reporter_factory_ : protocols::features::ProteinSilentReport , protocols::features::ReportToDB
• features_reporters_ : protocols::features::ProteinSilentReport , protocols::features::ReportToDB
• fetch_foldtree : protocols::seeded_abinitio::GrowPeptides
• ff_manager_ : core::scoring::saxs::SAXSEnergy , protocols::scoring::methods::saxs::PDDFEnergy
• ff_map_ : core::scoring::saxs::FormFactorManager , core::scoring::saxs::SAXSEnergy
• ff_ops_ : core::scoring::saxs::SAXSEnergy
• ff_values_ : core::scoring::saxs::FormFactor
• ff_vector_ : core::scoring::saxs::FormFactorManager
• fglen : core::scoring::APBSConfig
• fi_ : protocols::frag_picker::DiversifyCrmsdSelector
• field_ : protocols::wum::find_SilentStructOPs , protocols::wum::sort_SilentStructOPs
• figure_out_prepack_res_ : protocols::stepwise::modeler::StepWiseModeler
• fij_ : core::scoring::RDC
• file_ : protocols::canonical_sampling::PatchOperation , protocols::canonical_sampling::TrialCounterObserver
• file_2_data_map_ : protocols::scoring::methods::pcs::PCS_data_input_manager , protocols::scoring::methods::pcsTs1::PCS_data_input_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_data_input_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_data_input_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_data_input_manager_Ts4
• file_buf_rank_ : protocols::jd2::archive::ArchiveManager , protocols::jd2::MPIFileBufJobDistributor
• file_buffer : protocols::checkpoint::CheckPointer
• file_contents_ : protocols::pack_daemon::DynamicAggregateFunction
• file_name_ : protocols::canonical_sampling::MetricRecorder , protocols::canonical_sampling::TrajectoryRecorder , protocols::constraints_additional::ConstraintEvaluator
• file_name_prefix_ : protocols::protein_interface_design::movers::MapHotspot
• file_names_ : protocols::simple_filters::FileRemoveFilter , protocols::simple_filters::MultipleSigmoids
• file_node_2_instance_node_ : core::pack::interaction_graph::PDInteractionGraph
• file_out_ : protocols::match::output::WriteUpstreamCoordinateKinemage , protocols::match::output::WriteUpstreamHitKinemage
• file_read_ : core::import_pose::atom_tree_diffs::AtomTreeDiff , protocols::toolbox::match_enzdes_util::EnzdesLoopsFile
• file_reading_token_ : protocols::loops::Loops
• file_to_read_ : protocols::ddG::ddGData
• file_was_read_ : core::pack::task::operation::ReadResfile
• filename_ : core::io::raw_data::DecoyFileData , core::io::raw_data::DisulfideFile , core::io::raw_data::ScoreFileData , core::io::silent::SilentFileData , core::io::StructFileRep , core::scoring::func::SplineFunc , protocols::abinitio::abscript::ConstraintPreparer , protocols::canonical_sampling::mc_convergence_checks::HierarchicalLevel , protocols::checkpoint::FileBuffer , protocols::denovo_design::constraints::FileConstraintGenerator , protocols::farna::setup::RNA_DeNovoParameters , protocols::jd2::parser::FragmentReader , protocols::jd2::SingleFileBuffer , protocols::loophash::EXCN_DB_IO_Failed , protocols::loophash::EXCN_Wrong_DB_Format , protocols::noesy_assign::CrossPeakInfo , protocols::noesy_assign::PeakFileFormat_Base , protocols::qsar::RenderGridsToKinemage , protocols::scoring::methods::pcs2::PcsDataLanthanide , protocols::scoring::methods::pcs2::PcsInputFile , protocols::scoring::methods::pcs::PCS_data_per_lanthanides , protocols::scoring::methods::pcs::PCS_file_data , protocols::scoring::methods::pcsTs1::PCS_data_per_lanthanides_Ts1 , protocols::scoring::methods::pcsTs1::PCS_file_data_Ts1 , protocols::scoring::methods::pcsTs2::PCS_data_per_lanthanides_Ts2 , protocols::scoring::methods::pcsTs2::PCS_file_data_Ts2 , protocols::scoring::methods::pcsTs3::PCS_data_per_lanthanides_Ts3 , protocols::scoring::methods::pcsTs3::PCS_file_data_Ts3 , protocols::scoring::methods::pcsTs4::PCS_data_per_lanthanides_Ts4 , protocols::scoring::methods::pcsTs4::PCS_file_data_Ts4 , protocols::simple_filters::FileExistFilter , protocols::simple_filters::GeometryFilter , protocols::simple_filters::SavePoseConstraintToFileFilter , protocols::simple_filters::SSMotifFinder , protocols::simple_moves::LoadPDBMover , protocols::topology_broker::ConstraintClaimer , protocols::topology_broker::CoordConstraintClaimer
• filename_root_ : protocols::dna::DnaInterfacePacker , protocols::motifs::MotifDnaPacker
• filenames_ : core::import_pose::pose_stream::LazySilentFilePoseInputStream , core::import_pose::pose_stream::PDBPoseInputStream , core::import_pose::pose_stream::SilentFilePoseInputStream , protocols::scoring::methods::pcs2::PcsGridSearchParameter , protocols::simple_filters::StemFinder , protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• files_for_state_ : protocols::pack_daemon::DynamicAggregateFunction
• filled_substitution_history_ : core::pack::interaction_graph::LinearMemNode , core::pack::interaction_graph::SymmLinearMemNode
• filter_ : core::pack::task::operation::OperateOnCertainResidues , protocols::cluster::GatherPosesMover , protocols::docking::DockMCMProtocol , protocols::enzdes::RemoveLigandFilter , protocols::flxbb::FlxbbDesignPack , protocols::hotspot_hashing::HotspotStub , protocols::hotspot_hashing::HotspotStubSet , protocols::loop_modeling::utilities::LoopFilter , protocols::moves::FilterReporterMover , protocols::moves::IfMover , protocols::moves::IteratedConvergenceMover , protocols::pose_reporters::FilterReporter , protocols::pose_selectors::Filter , protocols::protein_interface_design::filters::FilterScanFilter , protocols::protein_interface_design::movers::SetTemperatureFactor , protocols::simple_filters::DdgFilter , protocols::simple_filters::DeltaFilter , protocols::simple_filters::RangeFilter , protocols::simple_filters::RelativePoseFilter , protocols::simple_filters::RepeatParameterFilter , protocols::simple_filters::ReportFilter , protocols::simple_filters::Sigmoid , protocols::simple_moves::ContingentAcceptMover , protocols::simple_moves::ddG , protocols::simple_moves::ResetBaselineMover
• filter_beta : protocols::loophash::FilterBucket
• filter_by_lj_ : protocols::match::output::MatchCollisionFilter
• filter_by_phipsi_ : protocols::loophash::LoopHashDiversifier , protocols::loophash::LoopHashMoverWrapper , protocols::loophash::LoopHashSampler
• filter_chain_closure_ : protocols::farna::options::RNA_FragmentMonteCarloOptions
• filter_chain_closure_distance_ : protocols::farna::options::RNA_FragmentMonteCarloOptions
• filter_chain_closure_halfway_ : protocols::farna::options::RNA_FragmentMonteCarloOptions
• filter_complex_cycles_ : protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions
• filter_creator_map_ : core::pack::task::operation::ResFilterFactory , protocols::filters::FilterFactory
• filter_cst_ : protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
• filter_cst_weight_ : protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
• filter_deltas_ : protocols::design_opt::GreedyOptMutationMover , protocols::matdes::MatDesGreedyOptMutationMover
• filter_during_design_ : protocols::flxbb::FlxbbDesign
• filter_failcounts_ : protocols::match::output::MatchProcessor
• filter_for_chain_closable_geometry_ : protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
• filter_for_moving_res_contact : protocols::stepwise::modeler::rna::Filterer_Count
• filter_for_moving_res_contact_ : protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
• filter_for_previous_clash : protocols::stepwise::modeler::rna::Filterer_Count
• filter_for_previous_clash_ : protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
• filter_for_previous_contact : protocols::stepwise::modeler::rna::Filterer_Count
• filter_for_previous_contact_ : protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
• filter_gly : protocols::loophash::FilterBucket
• filter_helix_ : protocols::fldsgn::filters::SecondaryStructureCountFilter , protocols::fldsgn::filters::SecondaryStructureHasResidueFilter
• filter_helix_sheet_ : protocols::fldsgn::filters::SecondaryStructureCountFilter
• filter_intrabb_ : protocols::matdes::BuildingBlockInterfaceOperation
• filter_loop_ : protocols::fldsgn::filters::SecondaryStructureCountFilter , protocols::fldsgn::filters::SecondaryStructureHasResidueFilter
• filter_lores_base_pairs_ : protocols::farna::options::RNA_FragmentMonteCarloOptions
• filter_lores_base_pairs_early_ : protocols::farna::options::RNA_FragmentMonteCarloOptions
• filter_max_angle_ : protocols::fldsgn::filters::HSSTripletFilter
• filter_max_dist_ : protocols::fldsgn::filters::HSSTripletFilter
• filter_min_angle_ : protocols::fldsgn::filters::HSSTripletFilter
• filter_min_dist_ : protocols::fldsgn::filters::HSSTripletFilter
• filter_mode_ : protocols::protein_interface_design::filters::AtomicContactCountFilter
• filter_mover_ : protocols::moves::FilterReporterMover
• filter_name_ : protocols::match::output::MatchFilter , protocols::simple_filters::RelativePoseFilter , protocols::topology_broker::ConstraintClaimer
• filter_names_ : protocols::match::MatcherTask
• filter_native_big_bins_ : protocols::stepwise::modeler::options::StepWiseProteinModelerOptions , protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler , protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions
• filter_on_ : protocols::flxbb::FilterStructs
• filter_params_bool_ : protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter
• filter_params_real_ : protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter
• filter_params_size_ : protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter
• filter_params_string_ : protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter
• filter_pro : protocols::loophash::FilterBucket
• filter_SASA_ : protocols::anchored_design::AnchoredDesignMover
• filter_score_ : protocols::anchored_design::AnchoredDesignMover
• filter_sheet_ : protocols::fldsgn::filters::SecondaryStructureCountFilter , protocols::fldsgn::filters::SecondaryStructureHasResidueFilter
• filter_stage2_beginning : protocols::relax::ClassicRelax
• filter_stage2_end : protocols::relax::ClassicRelax
• filter_stage2_half : protocols::relax::ClassicRelax
• filter_stage2_quarter : protocols::relax::ClassicRelax
• filter_structs_ : protocols::flxbb::DesignTask
• filter_templates_ : protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeProtocol
• filter_thresholds_ : protocols::matdes::MatDesGreedyOptMutationMover , protocols::matdes::MatDesPointMutationCalculator
• filter_upstream_and_downstream_collisions_by_score_ : protocols::match::MatcherTask
• filter_upstream_and_downstream_residue_collisions_ : protocols::match::MatcherTask
• filter_upstream_collisions_by_score_ : protocols::match::MatcherTask
• filter_upstream_residue_collisions_ : protocols::match::MatcherTask
• filter_user_alignment_res_ : protocols::stepwise::legacy::modeler::rna::StepWiseWorkingParametersSetup
• filter_val_ : protocols::simple_filters::ReportFilter
• filter_value_ : protocols::fldsgn::filters::CoreDunbrackFilter , protocols::fldsgn::filters::InterlockingAromaFilter , protocols::fldsgn::filters::NcontactsFilter , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter
• filter_virtual_res_list_ : protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
• filter_weight_ : protocols::topology_broker::ConstraintClaimer
• filtered_abego_ : protocols::fldsgn::filters::SecondaryStructureFilter
• filtered_area_ : protocols::simple_filters::ShapeComplementarityFilter
• filtered_base_axis_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_base_pair_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_base_stack_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_base_stack_axis_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_base_stagger_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_sc_ : protocols::simple_filters::ShapeComplementarityFilter
• filtered_score_ : protocols::simple_filters::PackStatFilter
• filtered_sheet_topology_ : protocols::fldsgn::filters::SheetTopologyFilter
• filtered_ss_ : protocols::fldsgn::filters::SecondaryStructureFilter
• filtered_type_ : protocols::fldsgn::filters::FragQualFilter
• filtered_value_ : protocols::fldsgn::filters::FragQualFilter , protocols::simple_filters::HolesFilter , protocols::simple_filters::InterRepeatContactFilter , protocols::simple_filters::IntraRepeatContactFilter , protocols::simple_filters::LeastNativeLike9merFilter , protocols::simple_filters::SSElementMotifContactFilter
• filterer_count_ : protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
• filterered_combine_tag_info_list_ : protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
• filterlist_ : protocols::filters::CombinedFilter , protocols::generalized_kinematic_closure::GeneralizedKIC
• filters_ : protocols::design_opt::GreedyOptMutationMover , protocols::design_opt::PointMutationCalculator , protocols::docking::DockingLowResFilter , protocols::filters::CalculatorFilter , protocols::filters::FilterCollection , protocols::frag_picker::FragmentPicker , protocols::loops::loop_closure::kinematic_closure::KinematicMover , protocols::match::output::MatchProcessor , protocols::matdes::MatDesGreedyOptMutationMover , protocols::matdes::MatDesPointMutationCalculator , protocols::simple_filters::Operator , protocols::simple_moves::GenericMonteCarloMover
• filters_with_state_ : protocols::match::output::MatchProcessor
• filtertype_ : protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter
• final : protocols::jd2::archive::MPIArchiveJobDistributor::CompletionMessage
• final_correct_oop_post_ : protocols::ncbb::oop::OopCreatorMover
• final_design_min_ : protocols::ncbb::NcbbDockDesignProtocol , protocols::ncbb::oop::OopDockDesignProtocol
• final_dist_power_ : protocols::noesy_assign::DistanceScoreMover
• final_energy : protocols::vip::VIP_Mover
• final_filter_ : protocols::protein_interface_design::movers::PlaceSimultaneouslyMover , protocols::protein_interface_design::movers::PlaceStubMover , protocols::protein_interface_design::movers::TryRotamers
• final_fold_tree_ : protocols::abinitio::KinematicControl , protocols::topology_broker::TopologyBroker
• final_ft_ : protocols::abinitio::abscript::AbscriptLoopCloserCM
• final_mc_ : protocols::ncbb::oop::OopCreatorMover
• final_min_ : protocols::carbohydrates::GlycanRelaxMover
• final_minimize_ : protocols::ncbb::oop::OopCreatorMover
• final_pose : protocols::vip::VIP_Mover
• final_repack_ : protocols::grafting::AnchoredGraftMover , protocols::ncbb::oop::OopCreatorMover
• final_rmsd_ : protocols::pose_length_moves::PossibleLoop
• final_rotamers_ : protocols::make_rot_lib::MakeRotLibMover
• final_scorefxn_ : protocols::farna::RNA_FragmentMonteCarlo , protocols::rosetta_scripts::ParsedProtocol , protocols::stepwise::modeler::StepWiseMinimizer
• final_scores_ : protocols::residue_optimization::MetapatchEnumeration
• final_screener_ : protocols::stepwise::screener::IntegrationTestBreaker
• final_temp : protocols::rbsegment_relax::RBSegmentRelax
• final_temp_ : protocols::loop_modeling::LoopProtocol
• final_test_ : protocols::motifs::MotifHit
• final_unrelaxed_pose : protocols::vip::VIP_Mover
• final_weight_ : protocols::abinitio::CoordinateConstraintKC
• final_weight_linear_chainbreak_ : protocols::loops::loop_closure::ccd::LoopClosure
• final_weight_overlap_chainbreak_ : protocols::loops::loop_closure::ccd::LoopClosure
• finalize_MPI_ : protocols::jd2::MPIWorkPoolJobDistributor
• finalized_ : core::chemical::ResidueType , protocols::fldsgn::topology::StrandPairingSet
• finalized_energies_ : core::scoring::Energies
• finalPoseOP_ : protocols::pose_length_moves::PossibleLoop
• find_automatically_ : protocols::protein_interface_design::movers::AddChainBreak
• fine_centering_mode : core::scoring::APBSConfig::I_PARAM
• fine_rmsd_count : protocols::stepwise::modeler::rna::StepWiseRNA_CountStruct
• finer_sampling_at_chain_closure_ : protocols::stepwise::modeler::options::StepWiseRNA_ModelerOptions , protocols::stepwise::screener::RNA_ChainClosableGeometryScreener
• finish_scorefxn_ : protocols::stepwise::modeler::rna::helix::RNA_HelixAssembler
• finish_stage_ : protocols::abinitio::IterativeBase
• finished_ : protocols::canonical_sampling::AsyncMPITemperingBase , protocols::canonical_sampling::mc_convergence_checks::DataBuffer
• finished_recv_buffer_ : protocols::canonical_sampling::AsyncMPITemperingBase
• finished_send_buffer_ : protocols::canonical_sampling::AsyncMPITemperingBase
• first : core::fragment::FragID , protocols::rosetta_scripts::ParsedProtocol::MoverFilterPair
• first_ : protocols::match::Hit , protocols::match::upstream_hit
• first_apply_ : protocols::protein_interface_design::movers::SaveAndRetrieveSidechains
• first_apply_with_current_setup_ : protocols::docking::DockingLowRes , protocols::docking::DockingProtocol , protocols::docking::TemperedDocking
• first_atom_ : protocols::frag_picker::scores::AtomPairConstraintsData , protocols::frag_picker::scores::FourAtomsConstraintData
• first_atom_in_branch_ : core::scoring::trie::TrieNode< AT, CPDATA >
• first_batch_this_stage_ : protocols::abinitio::IterativeBase
• first_class_node_ : core::pack::interaction_graph::BackgroundToFirstClassEdge< V, E, G >
• first_class_node_index_ : core::pack::interaction_graph::BackgroundToFirstClassEdge< V, E, G >
• first_fullatom_batch_ : protocols::abinitio::IterativeBase
• first_minimize_with_fixed_base_ : protocols::stepwise::modeler::rna::sugar::VirtualSugarSampler
• first_mover_ : protocols::moves::JumpOutMover
• first_nbr_ : core::optimization::ParticleSwarmMinimizer
• first_node_num_states_per_aatype_ : core::pack::interaction_graph::AminoAcidNeighborSparseMatrix< T >
• first_noesy_cst_file_ : protocols::abinitio::IterativeBase
• first_noesy_fa_cst_file_ : protocols::abinitio::IterativeBase
• first_pc : protocols::features::Segment
• first_pose_ : protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
• first_res_ : protocols::simple_moves::RepeatPropagationMover
• first_res_index_ : protocols::helical_bundle::FitSimpleHelixMultiFunc
• first_residue_index_ : protocols::frag_picker::CSTalosIO , protocols::frag_picker::PhiPsiTalosIO
• first_sampler_ : protocols::stepwise::screener::TagDefinition
• first_sidechain_hydrogen_ : core::chemical::ResidueType
• first_time_prepping_for_simA_ : core::pack::interaction_graph::LinearMemoryInteractionGraph , core::pack::interaction_graph::SymmLinearMemoryInteractionGraph , core::pack::interaction_graph::SymmMinimalistInteractionGraph
• first_time_writing_ : protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD
• first_upper_edge_ : core::graph::Node
• firstRes : protocols::sparta::Sparta::SpartaLib
• firstRes_ : core::scoring::methods::RG_LocalEnergy
• firstResID : protocols::sparta::GDB
• firstResidue_ : protocols::pose_length_moves::FixAllLoopsMover
• FIT_Tab : protocols::sparta::Sparta::SpartaLib
• fitFileName : protocols::sparta::Sparta::SpartaLib
• fitness_ : core::optimization::Particle , protocols::genetic_algorithm::Entity , protocols::multistate_design::SingleStateEntityData
• fitness_exp_ : protocols::pack_daemon::DynamicAggregateFunction
• fitness_function_ : protocols::genetic_algorithm::GeneticAlgorithm , protocols::multistate_design::SingleState
• fitness_pbest_ : core::optimization::Particle
• fitness_threshold_ : protocols::protein_interface_design::filters::BoltzmannFilter
• fitness_valid_ : protocols::genetic_algorithm::Entity
• five_prime_atom : protocols::stepwise::modeler::rna::Jump_point
• five_prime_chain_break : protocols::stepwise::modeler::rna::sugar::SugarModeling
• five_prime_chain_break_res_ : protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker , protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• five_prime_phosphate_res_input_ : protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler
• five_prime_res_ : protocols::stepwise::modeler::rna::checker::RNA_ChainClosureChecker
• five_prime_seq_num : protocols::stepwise::modeler::rna::Jump_point
• five_prime_xyz_ : protocols::stepwise::screener::RNA_ChainClosableGeometryResidueBasedScreener
• fix_backbone_ : protocols::simple_moves::CoupledMover
• fix_catalytic_ : protocols::enzdes::EnzRepackMinimize
• fix_catalytic_aa_ : protocols::enzdes::EnzdesBaseProtocol , protocols::enzdes::SetCatalyticResPackBehavior
• fix_his_tautomer_ : core::pack::task::ResidueLevelTask_
• fix_ligands_ : protocols::rbsegment_relax::RBSegmentRelax
• fix_natsc_ : protocols::loops::loop_mover::refine::LoopMover_Refine_KIC
• fix_omega_ : protocols::relax::RelaxProtocolBase
• fix_reference_energies_ : protocols::optimize_weights::OptEMultifunc
• fix_short_segment_ : protocols::simple_moves::BBGaussianMover
• fixed_ : core::scoring::OneToAllEnergyContainer
• fixed_atom_ : core::scoring::constraints::CoordinateConstraint
• fixed_atom_id_ : core::scoring::constraints::BackboneStubConstraint , core::scoring::constraints::BackboneStubLinearConstraint
• fixed_chains_ : protocols::analysis::InterfaceAnalyzerMover
• fixed_count_ : protocols::optimize_weights::IterativeOptEDriver
• fixed_data_ : protocols::optimize_weights::PNatAAOptERotamerData , protocols::optimize_weights::PNatRotOptERotamerData , protocols::optimize_weights::SingleStructureData
• fixed_energies_ : core::scoring::MinimizationGraph
• fixed_energy_terms_ : protocols::optimize_weights::OptEData
• fixed_parameters_ : protocols::optimize_weights::IterativeOptEDriver
• fixed_reference_point_ : core::scoring::constraints::BackboneStubConstraint , core::scoring::constraints::BackboneStubLinearConstraint
• fixed_res_ : protocols::stepwise::legacy::modeler::protein::StepWiseProteinMinimizer , protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup , protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer , protocols::stepwise::legacy::modeler::rna::StepWiseWorkingParametersSetup , protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters , protocols::stepwise::monte_carlo::mover::TransientCutpointHandler
• fixed_residue_ : core::scoring::methods::PoissonBoltzmannEnergy
• fixed_residues_ : protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker
• fixed_score_list_ : protocols::optimize_weights::IterativeOptEDriver , protocols::optimize_weights::OptEMultifunc , protocols::optimize_weights::WrapperOptEMultifunc
• fixed_score_names_ : protocols::optimize_weights::WrapperOptEMultifunc
• fixed_scores_ : protocols::optimize_weights::WrapperOptEMultifunc
• fixed_stub_ : core::scoring::constraints::LocalCoordinateConstraint
• fixed_terms_ : protocols::optimize_weights::OptEMultifunc
• fixed_to_metal_ : protocols::metal_interface::ZincHeterodimerMover
• fixResidue_ : protocols::jumping::ResiduePairJumpSingle
• fj_ : protocols::frag_picker::DiversifyCrmsdSelector
• flag_for_calculation_ : core::scoring::FACTSResidueInfo
• flags_ : protocols::flexpep_docking::FlexPepDockingAbInitio , protocols::flexpep_docking::FlexPepDockingLowRes , protocols::flexpep_docking::FlexPepDockingPoseMetrics , protocols::flexpep_docking::FlexPepDockingProtocol
• flags_and_objects_are_in_sync_ : protocols::antibody::AntibodyModelerProtocol , protocols::docking::DockingLowRes , protocols::docking::DockingProtocol , protocols::docking::TemperedDocking
• flank_cdrh3_map_ : protocols::antibody::H3RefineCCD
• flank_relax_ : protocols::antibody::H3RefineCCD , protocols::antibody::RefineOneCDRLoop , protocols::antibody_legacy::CDRH3Modeler
• flank_residue_min_ : protocols::antibody::AntibodyModelerProtocol , protocols::loops::loop_mover::refine::LoopMover_Refine_CCD , protocols::loops::loop_mover::refine::LoopMover_Refine_KIC
• flank_residue_size_ : protocols::antibody::AntibodyModelerProtocol
• flank_size_ : protocols::antibody::GraftOneCDRLoop , protocols::antibody::H3RefineCCD , protocols::antibody::RefineOneCDRLoop
• flanking_residues_ : protocols::antibody::CloseOneCDRLoop , protocols::antibody_legacy::CloseOneMover
• flanking_rms_cutoff_ : protocols::sewing::LoophashAssemblyMover
• flat_bottom_constraints_ : protocols::fldsgn::SheetConstraintGenerator
• flex_cter_ : protocols::ub_e2c::ubi_e2c_modeler
• flex_cter_map_ : protocols::ub_e2c::ubi_e2c_modeler
• flex_dna_sugar_ : protocols::motifs::MotifDnaPacker
• flex_regions_ : protocols::enzdes::EnzdesFlexBBProtocol
• flexible_bb_ : protocols::docking::membrane::MPFindInterfaceMover
• flexible_sc_ : protocols::docking::membrane::MPFindInterfaceMover
• flexseg_bb_offset_ : protocols::flexpack::interaction_graph::FlexbbInteractionGraph
• flexseg_considering_alt_bb_ : protocols::flexpack::interaction_graph::FlexbbInteractionGraph
• flexseg_for_bb_ : protocols::flexpack::interaction_graph::FlexbbInteractionGraph
• flexseg_for_moltenres_ : protocols::flexpack::interaction_graph::FlexbbInteractionGraph
• flexseg_members_ : protocols::flexpack::interaction_graph::FlexbbInteractionGraph
• flexsegment_span_ : protocols::flexpack::rotamer_set::FlexbbRotamerSets
• flip_cp_rep_ : core::scoring::elec::FA_ElecEnergy
• flip_HNQ_ : core::pack::task::operation::OptH , core::pack::task::ResidueLevelTask_
• flip_input_about_axes_ : protocols::matdes::SymDofMover
• flip_rate_ : protocols::stepwise::sampler::rna::RNA_MC_Sugar
• flip_sign_ : protocols::simple_moves::GenericMonteCarloMover
• flips_ : protocols::docking::membrane::MPFindInterfaceMover
• floating_acceptance_ratio_ : protocols::jd2::archive::ArchiveBase
• floating_base_ : protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker , protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• floating_base_anchor_res_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• floating_pairs_ : protocols::hybridization::FoldTreeHybridize
• floor_ : protocols::filters::IfThenFilter
• fmax_ : core::scoring::func::MixtureFunc , core::scoring::hbonds::FadeInterval
• fmin_ : core::scoring::hbonds::FadeInterval
• fn_ : core::scoring::methods::CustomAtomPairEnergy
• fname_ : core::pose::ResidueIndexDescriptionFromFile , protocols::simple_moves::AddChainMover , protocols::simple_moves::DumpPdb
• fname_initialized_from_ : core::pack::task::ResfileContents
• fname_prefix_ : protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover
• fobj_ : protocols::mpi_refinement::MPI_Refinement , protocols::mpi_refinement::Serial_Refine
• fobjnames_ : protocols::mpi_refinement::MultiObjective
• focus_ : core::select::residue_selector::NeighborhoodResidueSelector
• focus_selector_ : core::select::residue_selector::NeighborhoodResidueSelector
• focus_set_ : core::select::residue_selector::NeighborhoodResidueSelector
• focus_str_ : core::select::residue_selector::NeighborhoodResidueSelector
• focused_bg_edge_ : core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G >
• focused_edge_ : core::graph::Graph , core::pack::interaction_graph::InteractionGraphBase
• focused_edge_iterator_ : core::pack::interaction_graph::InteractionGraphBase
• focused_edge_iterator_end_ : core::pack::interaction_graph::InteractionGraphBase
• focused_geomcst_id_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• focused_iterative_vector_expression_ : protocols::pack_daemon::DynamicAggregateFunction
• focused_node_ : core::scoring::constraints::CstResNeighbConstIterator , core::scoring::constraints::CstResNeighbIterator
• focused_residue_ : core::pack::scmin::SCMinMinimizerMap , core::scoring::disulfides::CentroidDisulfideNeighborConstIterator , core::scoring::disulfides::CentroidDisulfideNeighborIterator , core::scoring::disulfides::DisulfideMatchingNeighborConstIterator , core::scoring::disulfides::DisulfideMatchingNeighborIterator , core::scoring::disulfides::DisulfResNeighbConstIterator , core::scoring::disulfides::DisulfResNeighbIterator
• fold_label_resonance_ : protocols::noesy_assign::CrossPeakInfo
• fold_proton_resonance_ : protocols::noesy_assign::CrossPeakInfo
• fold_tree_ : core::conformation::Conformation , core::io::silent::BinarySilentStruct , core::io::silent::ProteinSilentStruct_Template< T > , core::io::silent::RigidBodySilentStruct , core::io::silent::RNA_SilentStruct , core::io::silent::ScoreJumpFileSilentStruct , core::pose::MiniPose , protocols::docking::DockingProtocol , protocols::docking::TemperedDocking , protocols::jumping::JumpSample , protocols::moves::ChangeFoldTreeMover , protocols::protein_interface_design::movers::SetAtomTree , protocols::seeded_abinitio::SeedFoldTree , protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters , protocols::topology_broker::TopologyBroker
• fold_tree_io_ : core::import_pose::ImportPoseOptions , core::io::StructFileRepOptions
• fold_tree_root_ : protocols::simple_moves::SetTorsion
• fold_tree_save_ : protocols::stepwise::monte_carlo::mover::TransientCutpointHandler
• folding_verteces_ : protocols::seeded_abinitio::SeedFoldTree
• foldtree_ : protocols::floppy_tail::FloppyTailMover
• foldtree_mover_ : protocols::hybridization::FoldTreeHybridize
• foldtree_string_ : core::io::StructFileRep
• foldtype2name_ : protocols::fldsgn::topology::SheetFoldTypeManager
• foldtype2spairs_ : protocols::fldsgn::topology::SheetFoldTypeManager
• follows : core::kinematics::Node
• footer_ : protocols::analysis::PeptideDeriverMarkdownStreamOutputter
• forbidden_names_ : protocols::moves::MoverFactory
• force : protocols::cartesian::CartesianAtom , protocols::ligand_docking::Translate_info
• force_align_ : protocols::stepwise::legacy::screener::SimpleRMSD_Screener , protocols::stepwise::modeler::align::StepWiseLegacyClusterer , protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
• force_anti_chi_res_list_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• force_apix_on_map_load_ : core::scoring::electron_density::ElectronDensity
• force_bb_ : core::chemical::ResidueType
• force_bitflip_ : core::io::silent::SilentStruct
• force_centroid_interaction_ : protocols::stepwise::modeler::options::StepWiseRNA_ModelerOptions , protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions , protocols::stepwise::screener::BaseCentroidScreener
• force_cluster_ : protocols::antibody::constraints::CDRDihedralConstraintMover
• force_combined_gaussian_approximation_ : core::scoring::func::GaussianChainFunc
• force_const_ : protocols::toolbox::match_enzdes_util::GeomSampleInfo
• force_constant_ : core::scoring::constraints::BackboneStubConstraint
• force_fold_tree_ : protocols::stepwise::legacy::modeler::rna::StepWiseWorkingParametersSetup
• force_ideal_chainbreak_ : protocols::coarse_rna::CoarseRNA_DeNovoProtocol
• force_internal_ : protocols::stepwise::legacy::modeler::rna::StepWiseWorkingParametersSetup
• force_job_purging_ : protocols::jd2::JobsContainer
• force_natro_ : protocols::matdes::MatDesGreedyOptMutationMover , protocols::matdes::MatDesPointMutationCalculator
• force_natro_for_stored_task_names_ : protocols::matdes::MatDesGreedyOptMutationMover
• force_nbr_atom_orient_ : core::chemical::ResidueType , core::chemical::SetOrientAtom
• force_nonideal_ : protocols::relax::FastRelax
• force_north_paper_db_ : protocols::antibody::design::AntibodySeqDesignTFCreator , protocols::antibody::task_operations::AddCDRProfileSetsOperation , protocols::antibody::task_operations::AddCDRProfilesOperation
• force_north_sugar_list_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• force_phosphate_instantiation_ : protocols::stepwise::modeler::options::StepWiseRNA_ModelerOptions , protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler , protocols::stepwise::modeler::rna::phosphate::PhosphateMover , protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions
• force_repack_ : protocols::loop_modeling::utilities::PrepareForFullatom
• force_south_sugar_list_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• force_ss_ : protocols::hybridization::CartesianSampler
• force_stub_intra_residue : protocols::environment::claims::JumpElement
• force_submotif_without_intervening_bulge_ : protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions
• force_syn_chi_res_list_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• force_unique_moves_ : protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector
• force_user_defined_jumps_ : protocols::stepwise::legacy::modeler::rna::StepWiseWorkingParametersSetup
• forced_cluster_ : protocols::antibody::constraints::CDRDihedralConstraintMover
• forced_pos_ : protocols::simple_filters::SymmetricMotifFilter
• forced_silent_struct_type_ : protocols::jd2::SilentFileJobOutputter
• forget_chains_and_interface_ : protocols::dna::RestrictDesignToProteinDNAInterface
• form_factors_ : core::scoring::fiber_diffraction::FAScatter
• formal_charge_ : core::chemical::Atom , core::chemical::sdf::MolFileIOAtom
• formalcharge : core::io::AtomInformation
• FORMAT : protocols::sparta::GDB
• format_ : core::fragment::picking_old::vall::VallResidue
• format_2011_ : core::fragment::picking_old::vall::VallResidue
• FORMAT_str : protocols::sparta::GDB
• forward_connections_ : protocols::sewing::SegmentGraph
• forward_jump_ : protocols::motifs::Motif
• forward_res_ : protocols::coarse_rna::CoarseRNA_LoopCloser
• forward_threshold_ : protocols::simple_moves::WobbleMover
• found_centroid_interaction_ : protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker
• found_match : core::indexed_structure_store::FragmentLookupResult
• found_res_compatibility_ : protocols::enzdes::SecondaryMatchProtocol
• found_res_compatibility_determined_ : protocols::enzdes::SecondaryMatchProtocol
• found_resis_ : protocols::enzdes::SecondaryMatchProtocol
• fourth_atom_ : protocols::frag_picker::scores::FourAtomsConstraintData
• fourth_offset_ : protocols::frag_picker::scores::FourAtomsConstraintData
• fpdock_metrics_ : protocols::flexpep_docking::FlexPepDockingProtocol
• frac_cav_ball_required_exposed : core::scoring::packstat::SasaOptions
• fraction_by_recombination_ : protocols::dna::DnaInterfaceMultiStateDesign , protocols::genetic_algorithm::GeneticAlgorithmBase , protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover
• fraction_chain1_delta_sasa_ : core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator
• fraction_chain2_delta_sasa_ : core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator
• fraction_done : protocols::boinc::BoincSharedMemory
• fraction_done_ : protocols::boinc::Boinc
• frag1_ : protocols::forge::components::VarLengthBuild , protocols::protein_interface_design::movers::LoopRemodel
• frag3_ : protocols::anchored_design::AnchorMoversData , protocols::forge::components::VarLengthBuild , protocols::protein_interface_design::movers::LoopRemodel
• frag3_weight : protocols::flexpep_docking::FlexPepDockingFlags
• frag5_weight : protocols::flexpep_docking::FlexPepDockingFlags
• frag9_ : protocols::forge::components::VarLengthBuild , protocols::protein_interface_design::movers::LoopRemodel
• frag9_weight : protocols::flexpep_docking::FlexPepDockingFlags
• frag_ : protocols::toolbox::pose_metric_calculators::FragQualCalculator
• frag_1mer_insertion_weight_ : protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeProtocol
• frag_bias_ : protocols::hybridization::CartesianSampler
• frag_cache_ : core::fragment::FragmentIO , protocols::simple_moves::GunnCost
• frag_designabilities_ : protocols::enzdes::EnzdesFlexibleRegion
• frag_factory_ : core::fragment::FragmentIO
• frag_files_ : protocols::indel::IndelOptimizationMover , protocols::stepwise::modeler::options::StepWiseProteinModelerOptions
• frag_length_ : protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover
• frag_libs_ : protocols::comparative_modeling::LoopRelaxMover , protocols::comparative_modeling::LoopRelaxThreadingMover , protocols::comparative_modeling::MultiThreadingMover , protocols::comparative_modeling::ThreadingMover , protocols::domain_assembly::AssembleLinkerMover , protocols::hybridization::WeightedFragmentSmoothTrialMover , protocols::hybridization::WeightedFragmentTrialMover , protocols::kinematic_closure::perturbers::FragmentPerturber , protocols::loop_build::LoopMover_SlidingWindow , protocols::LoopRebuild , protocols::loops::loop_mover::LoopMover , protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD , protocols::rbsegment_relax::AutoRBMover , protocols::rbsegment_relax::RBSegmentRelax
• frag_libs_1mer_ : protocols::hybridization::FoldTreeHybridize
• frag_libs_big_ : protocols::hybridization::FoldTreeHybridize
• frag_libs_small_ : protocols::hybridization::FoldTreeHybridize
• frag_list_ : core::fragment::Frame
• frag_map_ : protocols::frags::FragLib
• frag_mover_ : protocols::coarse_rna::CoarseRNA_DeNovoProtocol , protocols::loops::loop_closure::ccd::LoopClosure
• frag_num : protocols::simple_moves::LoggedFragmentMover::Item
• frag_picker_ : protocols::denovo_design::connection::BridgeChains
• frag_pos_coordinates_ : protocols::frag_picker::scores::FragmentAllAtomCrmsd , protocols::frag_picker::scores::FragmentCrmsd , protocols::frag_picker::scores::FragmentCrmsdResDepth , protocols::frag_picker::scores::FragmentDME
• frag_size_ : core::fragment::picking_old::vall::gen::LengthGen , protocols::coarse_rna::CoarseRNA_DeNovoProtocol , protocols::farna::movers::RNA_FragmentMover , protocols::farna::RNA_FragmentMonteCarlo , protocols::frag_picker::quota::QuotaCollector , protocols::frags::TorsionFragmentMover , protocols::jd2::parser::FragmentReader , protocols::topology_broker::TemplateFragmentClaimer
• frag_sizes_ : protocols::frag_picker::FragmentPicker , protocols::frag_picker::nonlocal::NonlocalFrags , protocols::frag_picker::scores::GunnCostScore , protocols::hybridization::CartesianSampler
• frag_source_file_ : protocols::coarse_rna::CoarseRNA_Fragments
• frag_source_pose_ : protocols::coarse_rna::CoarseRNA_Fragments
• frag_source_secstruct_ : protocols::coarse_rna::CoarseRNA_Fragments
• frag_types_ : core::fragment::FragFactory
• frag_weight_aligned_ : protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeProtocol
• fragcache_ : protocols::denovo_design::components::Picker
• fragDens_ : protocols::electron_density::DockIntoDensityMover
• fragfull_ : protocols::forge::components::VarLengthBuild
• fraglib_ : protocols::frags::TorsionFragmentMover
• fragLookupOP_ : core::indexed_structure_store::FragmentStore
• fragment_1 : protocols::features::helixAssembly::FragmentPair
• fragment_2 : protocols::features::helixAssembly::FragmentPair
• fragment_atoms : core::indexed_structure_store::FragmentSpecification
• fragment_bias_strategies_ : protocols::hybridization::CartesianSampler
• fragment_coordinates : core::indexed_structure_store::FragmentStore
• fragment_coordinates_ : protocols::frag_picker::scores::FragmentAllAtomCrmsd , protocols::frag_picker::scores::FragmentChunkCrms , protocols::frag_picker::scores::FragmentCrmsd , protocols::frag_picker::scores::FragmentCrmsdResDepth , protocols::frag_picker::scores::FragmentDME
• fragment_counters_ : protocols::enzdes::EnzdesFlexBBProtocol
• fragment_length : core::indexed_structure_store::FragmentSpecification
• fragment_library_pointer_map : protocols::farna::fragments::FullAtomRNA_Fragments
• fragment_num_ : protocols::nonlocal::SmoothPolicy::Candidate
• fragment_pose_ : protocols::frag_picker::scores::FragmentAllAtomCrmsd , protocols::frag_picker::scores::FragmentChunkCrms
• fragment_specification : core::indexed_structure_store::FragmentStore
• fragment_threshold_distances : core::indexed_structure_store::FragmentStore
• fragmentLength_ : protocols::frag_picker::FragmentCandidate
• fragmentProbs_ : protocols::hybridization::FragmentBiasAssigner
• fragments9_ : protocols::hybridization::CartesianHybridize
• fragments_ : core::fragment::FragmentRmsd , protocols::frags::SingleResidueTorsionFragmentLibrary , protocols::frags::TorsionFragmentLibrary , protocols::hybridization::CartesianSampler , protocols::ligand_docking::GrowLigand , protocols::ligand_docking::LigandDesign , protocols::medal::MedalExchangeMover , protocols::nonlocal::BiasedFragmentMover , protocols::nonlocal::Policy , protocols::nonlocal::SingleFragmentMover , protocols::seeded_abinitio::CloseFold
• fragments_big_ : protocols::hybridization::HybridizeProtocol , protocols::hybridization::MRMover , protocols::seeded_abinitio::SegmentHybridizer
• fragments_big_trim_ : protocols::hybridization::MRMover
• fragments_lg_ : protocols::medal::MedalMover , protocols::star::StarAbinitio
• fragments_picked_ : protocols::forge::components::VarLengthBuild
• fragments_set_ : protocols::abinitio::DomainAssembly
• fragments_sm_ : protocols::medal::MedalMover , protocols::star::StarAbinitio
• fragments_small_ : protocols::hybridization::HybridizeProtocol , protocols::hybridization::MRMover , protocols::seeded_abinitio::SegmentHybridizer
• fragments_small_trim_ : protocols::hybridization::MRMover
• fragmentStore_groups : core::indexed_structure_store::FragmentStore
• fragpick_list_ : protocols::abinitio::Templates
• fragprob_ : protocols::hybridization::CartesianHybridize
• fragprob_stage2_ : protocols::hybridization::HybridizeProtocol
• fragProbs_assigned_ : protocols::hybridization::FragmentBiasAssigner
• frags_ : protocols::noesy_assign::FragsToAtomDist
• frags_for_pos_ : protocols::frag_picker::quota::QuotaCollector
• frags_large_ : protocols::topology_broker::FragmentContainer
• frags_per_pos_ : protocols::frag_picker::FragmentSelectingRule
• frags_small_ : protocols::topology_broker::FragmentContainer
• fragset3mer_ : protocols::flexpep_docking::FlexPepDockingAbInitio , protocols::floppy_tail::FloppyTailMover
• fragset5mer_ : protocols::flexpep_docking::FlexPepDockingAbInitio
• fragset9mer_ : protocols::flexpep_docking::FlexPepDockingAbInitio
• fragset_ : protocols::abinitio::abscript::AbscriptLoopCloserCM , protocols::anchored_design::AnchorMoversData , protocols::loops::loop_closure::ccd::LoopClosure , protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure , protocols::simple_moves::FragmentMover
• fragset_large_ : protocols::abinitio::AbrelaxApplication , protocols::abinitio::DomainAssembly
• fragset_list_ : core::fragment::FragSetCollection
• fragset_small_ : protocols::abinitio::AbrelaxApplication , protocols::abinitio::DomainAssembly
• fragset_small_top25_ : protocols::abinitio::AbrelaxApplication
• fragset_templates_ : protocols::abinitio::AbrelaxApplication
• fragSetName_ : protocols::frag_picker::frag_movers::FragSetFromH5Mover
• fragsets_ : protocols::forge::remodel::RemodelLoopMover
• fragSetUnchanged_ : protocols::frag_picker::frag_movers::FragSetFromH5Mover
• frame_ : protocols::stepwise::sampler::protein::ProteinFragmentStepWiseSampler
• frame_cache_ : protocols::canonical_sampling::DbTrajectoryRecorder , protocols::trajectory::DbTrajectoryWriter
• frame_called_ : protocols::kinematic_closure::ClosureProblem
• frame_count_ : protocols::viewer::SilentObserver
• frame_pos : protocols::simple_moves::LoggedFragmentMover::Item
• frame_types_ : core::fragment::FragFactory
• frames_ : core::fragment::ConstantLengthFragSet , core::fragment::FragmentRmsd , core::fragment::MinimalFragSet , core::fragment::OrderedFragSet , protocols::flexpack::FlexPacker , protocols::match::upstream::FullChiSampleSet , protocols::nonlocal::BiasedFragmentMover , protocols::rbsegment_relax::FragInsertAndAlignMover
• framework_info_ : protocols::antibody::AntibodyInfo
• framework_mutator_ : protocols::antibody::design::AntibodyDesignMover
• free_2HOprime_bonus_ : core::scoring::methods::FreeDOF_Options
• free_count_ : protocols::optimize_weights::IterativeOptEDriver
• free_data_ : protocols::optimize_weights::PNatRotOptERotamerData , protocols::optimize_weights::SingleStructureData
• free_dof_options_ : core::scoring::methods::EnergyMethodOptions
• free_parameters_ : protocols::optimize_weights::IterativeOptEDriver
• free_res_weights_ : core::scoring::methods::FreeDOF_Energy
• free_score_list_ : protocols::optimize_weights::IterativeOptEDriver , protocols::optimize_weights::WrapperOptEMultifunc
• free_score_names_ : protocols::optimize_weights::WrapperOptEMultifunc
• free_side_chain_bonus_ : core::scoring::methods::FreeDOF_Options
• free_sugar_bonus_ : core::scoring::methods::FreeDOF_Options
• free_suite_bonus_ : core::scoring::methods::FreeDOF_Options
• free_term_constraints_ : protocols::optimize_weights::ConstraintedOptimizationWeightFunc
• free_term_map_ : protocols::optimize_weights::ConstraintedOptimizationWeightFunc
• free_terms_ : protocols::optimize_weights::ConstraintedOptimizationWeightFunc
• free_weights_after_minimization_ : protocols::optimize_weights::IterativeOptEDriver
• free_weights_before_minimization_ : protocols::optimize_weights::IterativeOptEDriver
• free_weights_inner_loop_ : protocols::optimize_weights::IterativeOptEDriver
• freeze_ : protocols::rigid::RigidBodyMover
• freeze_domains_ : protocols::coarse_rna::CoarseRNA_DeNovoProtocol
• freeze_endpoints_ : protocols::hybridization::CartesianSampler
• freeze_h3_ : protocols::antibody_legacy::CDRH3Modeler
• freq_ : protocols::noesy_assign::CrossPeak::Spin , protocols::noesy_assign::Resonance
• frequency_ : protocols::trajectory::DbTrajectoryWriter
• from_chain_ : protocols::seeded_abinitio::CAcstGenerator , protocols::seeded_abinitio::SwapSegment
• from_entry_ : protocols::protein_interface_design::PatchdockReader
• from_other_chains_ : protocols::protein_interface_design::filters::HbondsToResidueFilter
• from_res_ : protocols::simple_filters::SSMotifFinder , protocols::simple_filters::StemFinder
• from_same_chain_ : protocols::protein_interface_design::filters::HbondsToResidueFilter
• from_scratch_frequency_ : protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions
• from_scratch_mover_ : protocols::stepwise::monte_carlo::mover::StepWiseMasterMover
• frs_ : protocols::kinmatch::FunGroupTK
• fshave1 : protocols::mpi_refinement::MethodParams
• fshave2 : protocols::mpi_refinement::MethodParams
• fshave3 : protocols::mpi_refinement::MethodParams
• fstyle_A_ : protocols::scoring::methods::pcs::PCS_data_per_lanthanides , protocols::scoring::methods::pcsTs1::PCS_data_per_lanthanides_Ts1 , protocols::scoring::methods::pcsTs2::PCS_data_per_lanthanides_Ts2 , protocols::scoring::methods::pcsTs3::PCS_data_per_lanthanides_Ts3 , protocols::scoring::methods::pcsTs4::PCS_data_per_lanthanides_Ts4
• fstyle_b_ : protocols::scoring::methods::pcs::PCS_data_per_lanthanides , protocols::scoring::methods::pcsTs1::PCS_data_per_lanthanides_Ts1 , protocols::scoring::methods::pcsTs2::PCS_data_per_lanthanides_Ts2 , protocols::scoring::methods::pcsTs3::PCS_data_per_lanthanides_Ts3 , protocols::scoring::methods::pcsTs4::PCS_data_per_lanthanides_Ts4
• ft : core::kinematics::TreeVizBuilder , protocols::denovo_design::CutAndJump
• ft_ : protocols::membrane::OptimizeMembranePositionMover
• ft_mover_ : protocols::simple_moves::ChangeAndResetFoldTreeMover
• ft_restore_ : protocols::rbsegment_relax::MakeStarTopologyMover
• full_align_res : protocols::stepwise::modeler::rna::checker::VDW_RepScreenInfo
• full_constraint_ : protocols::ub_e2c::ubi_e2c_modeler
• full_constraint_set_ : protocols::abinitio::KinematicAbinitio
• full_database_ : protocols::toolbox::task_operations::DatabaseThread
• full_length_loop_rmsd_clustering_ : protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
• full_model_parameters_ : core::io::silent::SilentFileData , core::io::silent::SilentStruct , core::pose::full_model_info::FullModelInfo
• full_model_pose_for_constraints_ : core::pose::full_model_info::FullModelParameters
• full_movemap_ : protocols::carbohydrates::GlycanRelaxMover
• full_name_ : core::chemical::carbohydrates::CarbohydrateInfo
• full_optimize_ : protocols::stepwise::legacy::screener::SimplePoseSelection
• full_score_count : protocols::stepwise::modeler::rna::StepWiseRNA_CountStruct
• full_sequence_ : core::pose::full_model_info::FullModelParameters , protocols::stepwise::modeler::rna::helix::RNA_HelixAssembler , protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• full_sfxn_ : protocols::simple_moves::GreenPacker
• full_span_ : core::scoring::MembraneTopology
• full_to_input_res_map_ONE_ : protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
• full_to_input_res_map_TWO_ : protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
• full_to_sub_ : protocols::stepwise::modeler::protein::InputStreamWithResidueInfo , protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• fullatom_ : core::io::raw_data::DecoyStruct , core::io::silent::BinarySilentStruct , core::io::silent::ProteinSilentStruct_Template< T > , core::io::silent::RNA_SilentStruct , protocols::abinitio::IterativeAbrelax , protocols::cryst::DockLatticeMover , protocols::flexpep_docking::FlexPepDockingProtocol , protocols::hybridization::CartesianSampler , protocols::mpi_refinement::WorkUnit_FragInsert , protocols::symmetric_docking::SymDockProtocol , protocols::viewer::SilentObserver
• fullatom_allowed_CSP_fraction_ : protocols::ub_e2c::ubi_e2c_modeler
• fullatom_archive_ : protocols::abinitio::IterativeAbrelax
• fullatom_constraint_cutoff_ : protocols::ub_e2c::ubi_e2c_modeler
• fullatom_CSP_weight_ : protocols::ub_e2c::ubi_e2c_modeler
• fullatom_non_CSP_weight_ : protocols::ub_e2c::ubi_e2c_modeler
• fullatom_pool_ptr_ : protocols::abinitio::IterativeCentroid
• fullatom_relax_ : protocols::surface_docking::SurfaceDockingProtocol
• fullatom_scorefunction_ : protocols::anchored_design::AnchorMoversData , protocols::floppy_tail::FloppyTailMover , protocols::metal_interface::ZincHeterodimerMover
• fullatom_sfx_ : protocols::forge::components::BDR , protocols::forge::remodel::RemodelLigandHandler , protocols::forge::remodel::RemodelMover
• fullatom_stage_ : protocols::loop_modeling::LoopModeler
• fullLengthPoseOP_ : protocols::pose_length_moves::PossibleLoop
• fully_assigned_mm_bondangle_library_ : core::scoring::mm::MMBondAngleLibrary
• fully_assigned_mm_torsion_library_ : core::scoring::mm::MMTorsionLibrary
• fully_initialized : protocols::boinc::BoincSharedMemory
• fullyOccupied_ : core::grid::CartGrid< T >
• func_ : core::optimization::GA_Minimizer , core::optimization::Minimizer , core::optimization::NelderMeadSimplex , core::scoring::constraints::AmbiguousNMRConstraint , core::scoring::constraints::AmbiguousNMRDistanceConstraint , core::scoring::constraints::AngleConstraint , core::scoring::constraints::AtomPairConstraint , core::scoring::constraints::ConstantConstraint , core::scoring::constraints::CoordinateConstraint , core::scoring::constraints::DihedralConstraint , core::scoring::constraints::DihedralPairConstraint , core::scoring::constraints::DistancePairConstraint , core::scoring::constraints::DOF_Constraint , core::scoring::constraints::LocalCoordinateConstraint , core::scoring::custom_pair_distance::atoms_and_func_struct , core::scoring::custom_pair_distance::resatom_and_func_struct , core::scoring::func::EtableFunc , core::scoring::func::GaussianChainFunc , core::scoring::loop_graph::LoopScoreInfo , protocols::frag_picker::scores::AtomPairConstraintsData , protocols::frag_picker::scores::FourAtomsConstraintData
• func_factory_ : core::scoring::constraints::ConstraintIO
• func_sd_ : protocols::forge::constraints::InverseRotamersRCG
• func_to_weight_ : core::scoring::func::CountViolFunc , core::scoring::func::ScalarWeightedFunc , core::scoring::func::SkipViolFunc
• func_types_ : core::scoring::func::FuncFactory
• funcnames_ : protocols::pack_daemon::EntityCorrespondence
• funcs_ : core::scoring::func::SumFunc , core::scoring::methods::CustomAtomPairEnergy
• function_name_ : protocols::ligand_docking::rdf::RDFBinaryHbondFunction , protocols::ligand_docking::rdf::RDFChargeFunction , protocols::ligand_docking::rdf::RDFHbondFunction
• function_names_ : protocols::ligand_docking::rdf::RDFBase , protocols::pack_daemon::DynamicAggregateFunction , protocols::pack_daemon::EntityFunc
• function_sign_ : protocols::ligand_docking::rdf::RDFBinaryHbondFunction , protocols::ligand_docking::rdf::RDFChargeFunction , protocols::ligand_docking::rdf::RDFHbondFunction
• function_tag_ : protocols::toolbox::match_enzdes_util::GeomSampleInfo
• fuzzy_topology_ : protocols::abinitio::StrandConstraints
• Fv : protocols::antibody_legacy::Antibody
• Fv_sequence_ : protocols::antibody_legacy::Antibody