- k -

• k : protocols::cluster::Exemplar , protocols::md::Constraint , protocols::normalmode::ContactStruct
• K0_ : core::scoring::methods::BBIndepCartBondedParameters
• k1 : core::scoring::fiber_diffraction::Hankel
• k2 : core::scoring::fiber_diffraction::Hankel
• k48r_48_lys_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_48k_mtsl_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_ctr_of_mass_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_docking_map_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_end_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_swap_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_trim_end_ : protocols::ub_e2c::ubi_e2c_modeler
• K_ : core::scoring::constraints::KofNConstraint
• k_ : core::scoring::func::AmberPeriodicFunc , core::scoring::func::CharmmPeriodicFunc , core::scoring::func::PeriodicFunc , protocols::normalmode::NormalMode
• K_ : protocols::relax::LocalRelax
• k_angle_ : core::scoring::methods::IdealParametersDatabase
• k_dampen_ : protocols::normalmode::NormalModeMultifunc
• k_length_ : core::scoring::methods::IdealParametersDatabase
• k_long_ : protocols::normalmode::NormalMode
• k_short_ : protocols::normalmode::NormalMode
• k_SS_ : protocols::normalmode::NormalMode
• k_torsion_ : core::scoring::methods::IdealParametersDatabase
• k_torsion_improper_ : core::scoring::methods::IdealParametersDatabase
• k_torsion_proton_ : core::scoring::methods::IdealParametersDatabase
• k_uniform_ : protocols::normalmode::NormalMode
• Kappa_ : core::scoring::FACTSPotential , protocols::md::MDBase
• KB_description_ : core::scoring::func::SplineFunc
• kB_T_ : core::scoring::func::GaussianChainDoubleFunc , core::scoring::func::GaussianChainFunc , core::scoring::func::GaussianChainQuadrupleFunc , core::scoring::func::GaussianChainSingleFunc , core::scoring::func::GaussianChainTripleFunc
• kbp_data_ : protocols::qsar::scoring_grid::ShapeGrid
• KbT_ : protocols::make_rot_lib::MakeRotLibMover , protocols::make_rot_lib::MakeRotLibOptionsData
• keep_aas_ : core::pack::task::NOTAA , core::pack::task::operation::RestrictAbsentCanonicalAAS , protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation
• keep_adding_to_statistics_ : protocols::jd2::archive::NormalizedEvaluatedArchive
• keep_base_fixed_ : protocols::stepwise::modeler::rna::sugar::VirtualSugarJustInTimeInstantiator , protocols::stepwise::modeler::rna::sugar::VirtualSugarSampler
• keep_canonical_aas_ : core::pack::task::PIKAA
• keep_center : protocols::toolbox::ClusterOptions
• keep_covalent_ : protocols::enzdes::AddOrRemoveMatchCsts
• keep_current_ : protocols::antibody::design::MutateFrameworkForCluster
• keep_current_ds_ : protocols::denovo_design::DisulfidizeMover
• keep_disulfide_cys_ : protocols::simple_moves::MakePolyXMover
• keep_gly_ : protocols::simple_moves::MakePolyXMover
• keep_history_ : protocols::moves::PyMolMover , protocols::ncbb::NcbbDockDesignProtocol , protocols::ncbb::oop::OopDockDesignProtocol
• keep_input_foldtree_ : protocols::forge::remodel::RemodelLoopMover
• keep_input_protonation_state_ : core::io::StructFileRepOptions
• keep_known_bb_torsions_at_junctions_ : protocols::forge::build::SegmentInsert , protocols::forge::build::SegmentRebuild
• keep_mover_state_ : protocols::rosetta_scripts::MultipleOutputWrapper
• keep_nas_ : core::pack::task::PIKNA
• keep_native_ : protocols::protein_interface_design::filters::FilterScanFilter , protocols::toolbox::task_operations::SeqprofConsensusOperation
• keep_pose_constraint_ : protocols::hybridization::HybridizeProtocol
• keep_pose_in_memory_ : protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
• keep_pose_in_memory_hydrid_ : protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
• keep_pro_ : protocols::simple_moves::MakePolyXMover
• keep_rnas_ : core::pack::task::PIKRNA
• keep_rnl_pose_ : protocols::enzdes::EnzdesScorefileFilter
• keep_sidechains_ : protocols::cryst::RecomputeDensityMapMover
• keep_task_allowed_aa_ : protocols::toolbox::task_operations::ResidueProbDesignOperation
• keep_task_allowed_aas_ : protocols::antibody::task_operations::AddCDRProfileSetsOperation , protocols::antibody::task_operations::AddCDRProfilesOperation
• keep_trying_ : protocols::matdes::MatDesGreedyOptMutationMover
• key : protocols::loophash::LeapIndex
• key_ : protocols::frag_picker::VallResidue , protocols::multistate_design::MetricCalculatorFitnessFunction , protocols::toolbox::pose_metric_calculators::MetricValueGetter
• key_mask_BB_BB_ : core::scoring::motif::MotifHashManager
• key_set_ : core::scoring::motif::MotifHash
• keyword_in_progress_ : core::io::HeaderInformation
• keywords_ : core::io::HeaderInformation
• kic_ : protocols::seeded_abinitio::CloseFold
• kic_modeler_ : protocols::stepwise::modeler::StepWiseConnectionSampler
• kic_modeler_if_relevant_ : protocols::stepwise::modeler::options::StepWiseRNA_ModelerOptions
• kic_mover_ : protocols::loop_modeling::LoopBuilder
• kic_res1_ : protocols::cyclic_peptide::DeclareBond
• kic_res2_ : protocols::cyclic_peptide::DeclareBond
• kic_template_ : protocols::denovo_design::connection::BridgeTomponents
• kicclose_ : protocols::mpi_refinement::WorkUnit_KicCloser
• kill_antiparallel_ : core::scoring::SS_Killhairpins_Info
• kill_parallel_ : core::scoring::SS_Killhairpins_Info
• kind : core::scoring::packstat::Event
• kinemage_file_name_ : protocols::match::output::WriteUpstreamCoordinateKinemage , protocols::match::output::WriteUpstreamHitKinemage
• kinematic_control_ : protocols::abinitio::Protocol
• kinematic_mover_ : protocols::enzdes::EnzdesFlexBBProtocol , protocols::protein_interface_design::movers::PlaceOnLoop
• kinetic_energy_ : protocols::md::MDBase
• kinked_ : protocols::antibody_legacy::Antibody
• kinmover_ : protocols::loops::loop_closure::kinematic_closure::KinematicPerturber , protocols::loops::loop_closure::kinematic_closure::KinematicWrapper
• kmax_ : core::scoring::electron_density::ElectronDensity
• kmin_ : core::scoring::electron_density::ElectronDensity
• known_atoms_ : core::scoring::saxs::FormFactorManager
• Ks_spline_ : core::scoring::methods::BBDepCartBondedParameters
• kstep_ : core::scoring::electron_density::ElectronDensity
• kT_ : core::sequence::MCAligner
• kt_ : protocols::carbohydrates::GlycanRelaxMover
• kT_ : protocols::mpi_refinement::StructAvrgMover , protocols::optimize_weights::PNatLigPoseOptEData , protocols::stepwise::monte_carlo::mover::AddMover , protocols::stepwise::monte_carlo::rna::RNA_AddDeleteMonteCarlo , protocols::surface_docking::CentroidRelaxMover , protocols::surface_docking::FullatomRelaxMover
• Ktheta_ : core::scoring::mm::MMBondAngleResidueTypeParam