- g -

• g1_ : core::chemical::CopyEdge< Graph1, Graph2 > , core::chemical::CopyVertex< Graph1, Graph2 >
• g2_ : core::chemical::CopyEdge< Graph1, Graph2 > , core::chemical::CopyVertex< Graph1, Graph2 >
• g_ : core::pack::scmin::CartSCMinMultifunc , core::pack::scmin::SCMinMultifunc , protocols::denovo_design::components::FoldGraph , protocols::scoring::methods::pcs2::PcsTensor , protocols::scoring::methods::pcs::PCS_tensor , protocols::scoring::methods::pcsTs1::PCS_tensor_Ts1 , protocols::scoring::methods::pcsTs2::PCS_tensor_Ts2 , protocols::scoring::methods::pcsTs3::PCS_tensor_Ts3 , protocols::scoring::methods::pcsTs4::PCS_tensor_Ts4
• G_bins : core::scoring::dna::DirectReadoutPotential
• ga_mutation_probability_ : core::optimization::MinimizerOptions
• gamma : core::scoring::APBSConfig::R_PARAM , protocols::protein_interface_design::Transformation , Transformation
• gamma_ : core::io::CrystInfo , core::scoring::CSA , protocols::antibody::H3RefineCCD , protocols::canonical_sampling::BiasEnergy , protocols::cryst::Spacegroup , protocols::dna::DNABase
• Gamma_ : protocols::md::MDBase
• gamma_ : protocols::stepwise::sampler::rigid_body::EulerAngles
• gamma_atom_names_ : core::scoring::dna::DNATorsionPotential
• gamma_components_ : core::scoring::dna::DNATorsionPotential
• gamma_cutoff1 : core::pose::rna::RNA_SuiteName
• gamma_cutoff2 : core::pose::rna::RNA_SuiteName
• gamma_potential_ : core::scoring::rna::RNA_TorsionPotential
• gammammax : core::pose::rna::RNA_SuiteName
• gammammin : core::pose::rna::RNA_SuiteName
• gammapmax : core::pose::rna::RNA_SuiteName
• gammapmin : core::pose::rna::RNA_SuiteName
• gammatmax : core::pose::rna::RNA_SuiteName
• gammatmin : core::pose::rna::RNA_SuiteName
• gap_char_ : core::sequence::Sequence
• gap_distance_cutoff_ : protocols::farna::movers::RNA_LoopCloser
• gap_extend_ : core::sequence::ScoringScheme
• gap_open_ : core::sequence::ScoringScheme
• gap_size_ : protocols::stepwise::modeler::rna::checker::RNA_AtrRepChecker , protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker , protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• gapspan_ : protocols::dna::DesignProteinBackboneAroundDNA
• garbage_collector_ : protocols::jd2::MpiFileBuffer
• gasteiger_atom_type_ : core::chemical::Atom
• gasteiger_atom_type_set_ : core::chemical::gasteiger::PossibleAtomTypesForAtom
• gasteiger_atom_type_sets_ : core::chemical::ChemicalManager
• gasteiger_atom_types_ : core::chemical::ResidueType
• gate_pssm_scores_ : core::scoring::methods::NMerPSSMEnergy
• gate_svm_scores_ : core::scoring::methods::NMerSVMEnergy
• gaussian_ : protocols::simple_moves::sidechain_moves::PerturbChiSidechainMover
• gaussian_coeffs_ : core::scoring::SmoothScoreTermCoeffs
• gaussian_max_d : core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• gaussian_param_ : core::scoring::func::MixtureFunc
• gaussian_parameter_costheta_exocyclic_oxygen_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_costheta_exocyclic_oxygen_indirect_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_costheta_imine_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_costheta_imine_indirect_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_costheta_nonpolar_H_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_costheta_o2prime_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_costheta_o2prime_indirect_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_costheta_phosphate_oxygen_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_costheta_phosphate_oxygen_indirect_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_costheta_polar_H_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_costheta_water_oxygen_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_exocyclic_oxygen_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_exocyclic_oxygen_indirect_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_imine_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_imine_indirect_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_nonpolar_H_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_o2prime_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_o2prime_indirect_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_phosphate_oxygen_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_phosphate_oxygen_indirect_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_phosphate_p_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_polar_H_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_parameter_set_alpha_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_beta_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_chi_north_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_chi_south_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_delta_north_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_delta_south_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_epsilon_north_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_epsilon_south_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_gamma_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_nu1_north_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_nu1_south_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_nu2_north_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_nu2_south_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_zeta_alpha_ap_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_zeta_alpha_sc_minus_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_set_zeta_alpha_sc_plus_ : core::chemical::rna::RNA_FittedTorsionInfo
• gaussian_parameter_water_oxygen_ : core::scoring::magnesium::MgKnowledgeBasedPotential
• gaussian_stdev_ : protocols::stepwise::sampler::rna::RNA_MC_Suite
• gaussian_variance_ : core::scoring::func::GaussianChainDoubleFunc , core::scoring::func::GaussianChainFunc , core::scoring::func::GaussianChainQuadrupleFunc , core::scoring::func::GaussianChainSingleFunc , core::scoring::func::GaussianChainTripleFunc
• GBpair_cut_ : core::scoring::FACTSPotential
• GDBfileName : protocols::sparta::GDB
• gdt_by_TM_ : protocols::comparative_modeling::Align_RmsdEvaluator
• GDTHA : core::scoring::TMscoreStore
• GDTTS : core::scoring::TMscoreStore
• gen_alg_ : protocols::dna::DnaInterfaceMultiStateDesign , protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover
• gen_born_potential_ : core::scoring::ScoringManager
• general_base_pair_step_library_ : protocols::farna::libraries::RNA_LibraryManager
• general_event_link_ : protocols::moves::PyMolObserver
• general_name : core::chemical::rings::RingConformer
• general_obs_hub_ : core::conformation::Conformation , core::pose::Pose
• general_permit_overlap_ : protocols::match::BumpGrid
• general_phi_sd_ : protocols::antibody::constraints::CDRDihedralConstraintMover
• general_property_status_ : core::chemical::ResidueProperties
• general_psi_sd_ : protocols::antibody::constraints::CDRDihedralConstraintMover
• generate_invrot_csts_ : protocols::toolbox::match_enzdes_util::InvrotTreeNode
• generations_ : protocols::dna::DnaInterfaceMultiStateDesign , protocols::genetic_algorithm::GeneticAlgorithmBase , protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover
• generator_ : protocols::forge::constraints::RemoveConstraints
• generator_id_ : protocols::forge::constraints::RemoveConstraints
• generic_output_number_ : protocols::match::output::MatchScoreWriter
• generic_pose_build_resids_ : protocols::match::MatcherTask
• genericRB_sigR : protocols::rbsegment_relax::RBSegmentRelax
• genericRB_sigT : protocols::rbsegment_relax::RBSegmentRelax
• GenericRBMoveSet_ : protocols::rbsegment_relax::RBSegmentRelax
• genkic_closure_attempts_ : protocols::cyclic_peptide_predict::SimpleCycpepPredictApplication
• genkic_min_solution_count_ : protocols::cyclic_peptide_predict::SimpleCycpepPredictApplication
• geo_dim_type2name_ : core::scoring::hbonds::HBondTypeManager
• geo_sol_energy_ : protocols::features::GeometricSolvationFeatures
• geom_cst_ : protocols::toolbox::match_enzdes_util::InvrotTreeNode
• geom_cst_has_primary_modification_ : protocols::match::Matcher
• geom_cst_id_ : protocols::match::downstream::DownstreamAlgorithm
• geom_csts_downstream_output_ : protocols::match::MatcherTask
• geom_csts_with_primary_hitlist_modificiations_ : protocols::match::Matcher
• geom_id_ : protocols::match::output::WriteUpstreamHitKinemage
• geom_sol_interres_path_distance_cutoff_ : core::scoring::methods::EnergyMethodOptions
• geom_sol_intrares_path_distance_cutoff_ : core::scoring::methods::EnergyMethodOptions
• geomcst_is_upstream_only_ : protocols::match::Matcher
• geomcst_seqpos_ : protocols::forge::constraints::InvrotTreeRCG
• geomcsts_for_superposition_ : protocols::toolbox::match_enzdes_util::AlignPoseToInvrotTreeMover
• geometric_dimension_ : core::scoring::hbonds::Polynomial_1d
• geometric_sol_scale_ : core::scoring::geometric_solvation::GeometricSolEnergyEvaluator
• geometry_is_initialized_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• get_bins_per_A2_ : core::scoring::membrane::FaMPSolvEnergy , core::scoring::methods::Fa_MbsolvEnergy , core::scoring::methods::LK_hack , core::scoring::rna::RNA_LJ_BaseEnergy
• get_init_value_ : protocols::matdes::GetRBDOFValues
• ghost_loops_ : protocols::stepwise::modeler::options::StepWiseProteinModelerOptions , protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler
• ghost_map_ : protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler
• ghost_native_pose_ : protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler
• ghost_pose_ : protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler
• give_up_ : protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure
• glen : core::scoring::APBSConfig
• glob_flag_ : core::scoring::saxs::FormFactor
• global_offset_ : core::fragment::FragSet
• global_optimize_ : protocols::stepwise::modeler::options::StepWiseProteinModelerOptions
• global_requirements_ : protocols::sewing::sampling::requirements::RequirementSet
• global_sample_res_list_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• global_types_ : protocols::sewing::sampling::requirements::RequirementFactory
• gly_dG : protocols::analysis::InterfaceData
• gly_switch_ : core::pack::task::operation::RestrictYSDesign
• glycam_pdb_format_ : core::io::StructFileReaderOptions
• glycan_movemap_ : protocols::carbohydrates::GlycanRelaxMover
• glycorr_alt_conf_ : protocols::flexpack::interaction_graph::OTFFlexbbEdge
• glycorr_curr_conf_ : protocols::flexpack::interaction_graph::OTFFlexbbEdge
• glycorr_energies_ : protocols::flexpack::interaction_graph::OTFFlexbbEdge
• glycosylation_weights_ : protocols::carbohydrates::SimpleGlycosylateMover
• glycosylations_ : protocols::carbohydrates::SimpleGlycosylateMover
• gmax_cutoff_for_convergence_ : core::optimization::MinimizerOptions
• good : protocols::jd2::archive::MPIArchiveJobDistributor::CompletionMessage
• good_ : protocols::abinitio::Template , protocols::abinitio::Templates
• good_angle_count : protocols::stepwise::modeler::rna::StepWiseRNA_CountStruct
• good_atr_rotamer_count : protocols::stepwise::modeler::rna::StepWiseRNA_CountStruct
• good_bin_rep_count : protocols::stepwise::modeler::rna::StepWiseRNA_CountStruct
• good_data_ : protocols::frag_picker::LazySortedVector1< T, StrictWeakOrdering >
• good_distance_count : protocols::stepwise::modeler::rna::StepWiseRNA_CountStruct
• good_fix_pos_ : protocols::topology_broker::RigidChunkClaimer::CM_SuggestFixResidue
• good_rep_rotamer_count : protocols::stepwise::modeler::rna::StepWiseRNA_CountStruct
• goodfrags_ : protocols::toolbox::pose_metric_calculators::FragQualCalculator
• got_chain_numbers_ : core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator
• got_termination_signal_ : protocols::mpi_refinement::MPI_Refine_Master
• gp_b_allow_independent_alignment_per_fragment_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_b_allow_repeat_same_graft_output_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_b_full_motif_bb_alignment_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_b_graft_only_hotspots_by_sidechain_replacement_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_b_is_first_run_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_b_only_allow_if_C_point_match_aa_identity_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_b_only_allow_if_N_point_match_aa_identity_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_b_revert_graft_to_native_sequence_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_i_clash_score_cutoff_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_p_contextStructure_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_p_motif_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_p_target_pose_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_r_NC_points_RMSD_tolerance_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_r_RMSD_tolerance_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_s_clash_test_residue_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_vp_combinatory_fragment_size_delta_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_vp_max_fragment_replacement_size_delta_ : protocols::motif_grafting::movers::MotifGraftMover
• gp_vvr_hotspots_ : protocols::motif_grafting::movers::MotifGraftMover
• gpeptide_ : protocols::denovo_design::components::FoldGraph
• gradient_bins_ : protocols::qsar::RenderGridsToKinemage
• gradPtr : protocols::viewer::triangleIterator
• graft_designer_ : protocols::antibody::design::AntibodyDesignProtocol
• graft_h1_ : protocols::antibody::GraftCDRLoopsProtocol , protocols::antibody_legacy::AntibodyModeler , protocols::antibody_legacy::GraftMover
• graft_h2_ : protocols::antibody::GraftCDRLoopsProtocol , protocols::antibody_legacy::AntibodyModeler , protocols::antibody_legacy::GraftMover
• graft_h3_ : protocols::antibody::GraftCDRLoopsProtocol , protocols::antibody_legacy::AntibodyModeler , protocols::antibody_legacy::GraftMover
• graft_l1_ : protocols::antibody::GraftCDRLoopsProtocol , protocols::antibody_legacy::AntibodyModeler , protocols::antibody_legacy::GraftMover
• graft_l2_ : protocols::antibody::GraftCDRLoopsProtocol , protocols::antibody_legacy::AntibodyModeler , protocols::antibody_legacy::GraftMover
• graft_l3_ : protocols::antibody::GraftCDRLoopsProtocol , protocols::antibody_legacy::AntibodyModeler , protocols::antibody_legacy::GraftMover
• graft_log_ : protocols::antibody::design::AntibodyDesignMover
• graft_mover_ : protocols::antibody::AntibodyCDRGrafter , protocols::antibody::design::AntibodyDesignMover
• graft_sequence_ : protocols::antibody::GraftCDRLoopsProtocol
• graph_ : core::chemical::AcceptorAtomFilter , core::chemical::APolarHydrogenFilter , core::chemical::AromaticAtomFilter , core::chemical::HeavyAtomFilter , core::chemical::HeavyAtomWithHydrogensFilter , core::chemical::HeavyAtomWithPolarHydrogensFilter , core::chemical::HydrogenAtomFilter , core::chemical::PolarHydrogenFilter , core::chemical::RealFilter , core::chemical::RerootEdgeSorter , core::chemical::ResidueType , protocols::sewing::AssemblyMover
• graph_state_ : core::scoring::Energies
• greedy_ : protocols::rbsegment_relax::OptimizeThreadingMover
• greek_d_ : core::chemical::Atom
• grid : core::scoring::APBSConfig , core::scoring::electron_density::ElectronDensity , core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• grid_ : protocols::ligand_docking::Translate , protocols::match::Bool3DGrid , protocols::match::downstream::ActiveSiteGrid , protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid , protocols::qsar::RenderGridsToKinemage , protocols::qsar::scoring_grid::SingleGrid
• grid_atom_name_1_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager , protocols::scoring::methods::pcsTs1::PCS_Energy_parameters_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_Energy_parameters_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_Energy_parameters_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_Energy_parameters_manager_Ts4
• grid_atom_name_1_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_atom_name_1_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_atom_name_1_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_atom_name_1_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_atom_name_2_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager , protocols::scoring::methods::pcsTs1::PCS_Energy_parameters_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_Energy_parameters_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_Energy_parameters_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_Energy_parameters_manager_Ts4
• grid_atom_name_2_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_atom_name_2_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_atom_name_2_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_atom_name_2_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_centering_mode : core::scoring::APBSConfig::I_PARAM
• grid_cone_angle_cutoff_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager , protocols::scoring::methods::pcsTs1::PCS_Energy_parameters_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_Energy_parameters_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_Energy_parameters_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_Energy_parameters_manager_Ts4
• grid_cone_angle_cutoff_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_cone_angle_cutoff_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_cone_angle_cutoff_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_cone_angle_cutoff_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_creator_map_ : protocols::qsar::scoring_grid::GridFactory
• grid_data : core::scoring::APBSResult
• grid_edge_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager , protocols::scoring::methods::pcsTs1::PCS_Energy_parameters_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_Energy_parameters_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_Energy_parameters_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_Energy_parameters_manager_Ts4
• grid_edge_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_edge_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_edge_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_edge_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_indices_ : protocols::qsar::qsarOptFunc
• grid_k_vector_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager , protocols::scoring::methods::pcsTs1::PCS_Energy_parameters_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_Energy_parameters_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_Energy_parameters_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_Energy_parameters_manager_Ts4
• grid_k_vector_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_k_vector_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_k_vector_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_k_vector_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_large_cutoff_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager , protocols::scoring::methods::pcsTs1::PCS_Energy_parameters_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_Energy_parameters_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_Energy_parameters_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_Energy_parameters_manager_Ts4
• grid_large_cutoff_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_large_cutoff_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_large_cutoff_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_large_cutoff_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_map_ : protocols::qsar::scoring_grid::GridManager , protocols::qsar::scoring_grid::SolvationMetaGrid
• grid_map_cache_ : protocols::qsar::scoring_grid::GridManager
• grid_max_ : protocols::canonical_sampling::BiasEnergy::Histogram< T >
• grid_meta : core::scoring::APBSResult
• grid_min_ : protocols::canonical_sampling::BiasEnergy::Histogram< T >
• grid_name_ : protocols::qsar::RenderGridsToKinemage
• grid_output_file_ : protocols::canonical_sampling::BiasEnergy
• grid_residue_num_1_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager , protocols::scoring::methods::pcsTs1::PCS_Energy_parameters_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_Energy_parameters_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_Energy_parameters_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_Energy_parameters_manager_Ts4
• grid_residue_num_1_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_residue_num_1_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_residue_num_1_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_residue_num_1_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_residue_num_2_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager , protocols::scoring::methods::pcsTs1::PCS_Energy_parameters_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_Energy_parameters_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_Energy_parameters_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_Energy_parameters_manager_Ts4
• grid_residue_num_2_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_residue_num_2_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_residue_num_2_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_residue_num_2_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_s_p_all_ : protocols::scoring::methods::pcs2::PcsGridSearchParameterManager
• grid_small_cutoff_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager , protocols::scoring::methods::pcsTs1::PCS_Energy_parameters_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_Energy_parameters_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_Energy_parameters_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_Energy_parameters_manager_Ts4
• grid_small_cutoff_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_small_cutoff_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_small_cutoff_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_small_cutoff_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_spacing : core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• grid_spacing_ : core::scoring::electron_density::ElectronDensityOptions , core::scoring::PoissonBoltzmannPotential
• grid_step_ : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager , protocols::scoring::methods::pcsTs1::PCS_Energy_parameters_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_Energy_parameters_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_Energy_parameters_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_Energy_parameters_manager_Ts4
• grid_step_stage1_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_step_stage2_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_step_stage3_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_step_stage4_ : protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4
• grid_weights_ : protocols::qsar::scoring_grid::GridManager
• gridlig_active_site_definition_ : protocols::match::MatcherTask
• gridlig_fname_ : protocols::match::Matcher , protocols::match::MatcherTask
• grids_ : protocols::match::BumpGrid
• grids_to_use_ : protocols::qsar::qsarMover
• gridStep_ : protocols::electron_density::DockIntoDensityMover
• group1_ : protocols::toolbox::ResidueGroupIGEdgeUpweighter
• group1_resstring_ : core::select::residue_selector::InterGroupInterfaceByVectorSelector
• group1_selector_ : core::select::residue_selector::InterGroupInterfaceByVectorSelector
• group1_set_ : core::select::residue_selector::InterGroupInterfaceByVectorSelector
• group2_ : protocols::toolbox::ResidueGroupIGEdgeUpweighter
• group2_resstring_ : core::select::residue_selector::InterGroupInterfaceByVectorSelector
• group2_selector_ : core::select::residue_selector::InterGroupInterfaceByVectorSelector
• group2_set_ : core::select::residue_selector::InterGroupInterfaceByVectorSelector
• group_ : core::conformation::ResidueKinWriter , core::scoring::methods::D2H_SA_Energy , protocols::match::output::ResidueKinemageWriter , protocols::match::output::WriteUpstreamHitKinemage
• group_discriminator_ : protocols::simple_moves::GreenPacker
• group_file_ : core::scoring::elec::GroupElec
• group_ids_ : protocols::simple_moves::GreenPacker , protocols::simple_moves::UserDefinedGroupDiscriminator
• group_members_ : core::scoring::MultipoleParameter , protocols::simple_moves::GreenPacker
• group_size_ : protocols::cluster::Cluster
• grouped_fragment_map_ : core::indexed_structure_store::StructureStoreManager
• groupelec_ : core::scoring::elec::FA_GrpElecEnergy
• grouper_ : protocols::match::output::CloudPDBWriter , protocols::match::output::MatchConsolidator
• grouper_ds_rmsd_ : protocols::match::MatcherTask
• grouper_name_ : protocols::match::MatcherTask
• groups_ : protocols::toolbox::CalcInterNeighborGroup , protocols::toolbox::pose_metric_calculators::InterGroupNeighborsCalculator
• grow_attempts_ : protocols::loops::loop_mover::IndependentLoopMover
• grow_toward_Nterm_ : protocols::pose_length_moves::InsertResMover
• grp_cpfxn_ : core::scoring::elec::GroupElec , core::scoring::methods::EnergyMethodOptions
• grpelec_context_dependent_ : core::scoring::methods::EnergyMethodOptions
• grpelec_fade_hbond_ : core::scoring::methods::EnergyMethodOptions
• grpelec_fade_param1_ : core::scoring::methods::EnergyMethodOptions
• grpelec_fade_param2_ : core::scoring::methods::EnergyMethodOptions
• grpelec_fade_type_ : core::scoring::methods::EnergyMethodOptions
• guarded_loops_ : protocols::comparative_modeling::LoopRelaxMover , protocols::loops::loop_mover::LoopMover
• gunn_cost_ : protocols::frag_picker::scores::GunnCostScore
• gzipped_ : protocols::checkpoint::FileBuffer