ligand_dock.cc File Reference

#include <devel/init.hh>
#include <protocols/ligand_docking/ligand_dock_impl.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/jd2.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/docking.OptionKeys.gen.hh>
#include <basic/options/keys/enzdes.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>

Functions
static THREAD_LOCAL basic::Tracer	TR ("ligand_dock.main")
int	main (int argc, char *argv[])

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::options::OptionCollection::add_relevant(), basic::options::OptionKeys::out::file::atom_tree_diff, utility::io::oc::cout, basic::options::OptionKeys::enzdes::cstfile, basic::options::OptionKeys::in::path::database, basic::options::OptionKeys::docking::dock_pert, basic::options::OptionKeys::jd2::enzdes_out, basic::options::OptionKeys::packing::ex1::ex1, basic::options::OptionKeys::packing::ex1aro::ex1aro, basic::options::OptionKeys::packing::ex2::ex2, basic::options::OptionKeys::in::file::extra_res_fa, basic::options::OptionKeys::packing::extrachi_cutoff, basic::options::OptionKeys::packing::flip_HNQ, basic::options::OptionKeys::docking::ligand::harmonic_Calphas, basic::options::OptionKeys::docking::ligand::harmonic_torsions, basic::options::OptionKeys::docking::ligand::improve_orientation, devel::init(), basic::options::OptionKeys::docking::ligand::minimize_backbone, basic::options::OptionKeys::docking::ligand::minimize_ligand, utility::excn::EXCN_Base::msg(), basic::options::OptionKeys::docking::ligand::mutate_same_name3, basic::options::OptionKeys::in::file::native, basic::options::OptionKeys::packing::no_optH, basic::options::OptionKeys::jd2::no_output, basic::options::OptionKeys::out::nooutput, basic::options::OptionKeys::out::nstruct, basic::options::OptionKeys::docking::ligand::old_estat, basic::options::option, options, basic::options::OptionKeys::out::pdb, basic::options::OptionKeys::out::path::pdb, basic::options::OptionKeys::docking::ligand::protocol, basic::options::OptionKeys::docking::ligand::random_conformer, basic::options::OptionKeys::docking::randomize2, basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::out::file::score_only, basic::options::OptionKeys::out::file::silent, basic::options::OptionKeys::in::file::silent, basic::options::OptionKeys::out::file::silent_struct_type, basic::options::OptionKeys::docking::ligand::soft_rep, basic::options::OptionKeys::docking::ligand::start_from, basic::options::OptionKeys::out::suffix, basic::options::TR(), basic::options::OptionKeys::packing::unboundrot, basic::options::OptionKeys::docking::uniform_trans, basic::options::OptionKeys::out::use_database, basic::options::OptionKeys::inout::dbms::user, and basic::Tracer::Warning.

static THREAD_LOCAL basic::Tracer TR ( "ligand_dock.main"  )

static