extract_pdbs.cc File Reference

simple application for extracting PDBs from a silent-file. More...

#include <core/types.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <devel/init.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <core/pose/symmetry/util.hh>
#include <string>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
#include <boost/algorithm/string/erase.hpp>
#include <utility/excn/Exceptions.hh>

Functions
int	main (int argc, char *argv[])

Detailed Description

simple application for extracting PDBs from a silent-file.

Author

James Thompson

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::io::oc::cerr, basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, in::path::database(), basic::Tracer::Debug, basic::options::OptionKeys::cutoutdomain::end, utility::options::OptionKeys::options::exit, pyrosetta::get_score_function, devel::init(), app.surface_docking.surface_docking::input, utility::excn::EXCN_Base::msg(), OPT, option, options, score::patch(), app.surface_docking.surface_docking::pose, out::prefix(), in::file::rescore(), out::file::residue_type_set(), PyMOL_demo::scorefxn, in::file::silent(), in::file::silent_renumber(), in::file::silent_struct_type(), tag, in::file::tagfile(), in::file::tags(), tr(), basic::options::OptionKeys::inout::dbms::user, and score::weights().