r_noe_assign.cc File Reference

read and write XEASY format peak-lists More...

#include <protocols/noesy_assign/CrossPeakList.hh>
#include <protocols/noesy_assign/ResonanceList.hh>
#include <protocols/noesy_assign/PeakAssignmentParameters.hh>
#include <protocols/noesy_assign/NoesyModule.hh>
#include <protocols/noesy_assign/PeakFileFormat.hh>
#include <utility/excn/Exceptions.hh>
#include <devel/init.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/kinematics/Jump.hh>
#include <core/pose/annotated_sequence.hh>
#include <utility/vector1.hh>
#include <utility/excn/EXCN_Base.hh>

Functions
static THREAD_LOCAL basic::Tracer	tr ("main")
void	register_options ()
void	run_old ()
void	run ()
int	main (int argc, char *argv[])

Detailed Description

read and write XEASY format peak-lists

Author

Oliver Lange

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::io::oc::cerr, utility::io::oc::cout, devel::init(), utility::excn::EXCN_Base::msg(), register_options(), run(), and utility::excn::EXCN_Base::show().

void register_options

(

)

References basic::options::OptionKeys::templates::cst::cst, in::file::fasta(), basic::options::OptionKeys::frags::contacts::min_seq_sep, in::file::native(), NEW_OPT, OPT, options, and binder::split().

Referenced by main().

void run

(

)

References basic::options::OptionKeys::templates::cst::cst, basic::options::OptionKeys::constraints::cst_file, basic::options::OptionKeys::in::file::fasta, basic::Tracer::Info, basic::options::OptionKeys::frags::contacts::min_seq_sep, basic::options::OptionKeys::in::file::native, test.Workshop7test::native_pose, basic::NOESY_ASSIGN_TOTAL, option, options, app.surface_docking.surface_docking::pose, basic::prof_show(), PROF_START, PROF_STOP, binder::split(), tr(), and basic::options::OptionKeys::inout::dbms::user.

Referenced by main().

void run_old

(

)

static THREAD_LOCAL basic::Tracer tr ( "main"  )

static

Referenced by run().