extract_atomtree_diffs_jd1.cc File Reference

#include <protocols/jobdist/JobDistributors.hh>
#include <numeric/random/random_permutation.hh>
#include <utility/file/FileName.hh>
#include <utility/pointer/owning_ptr.hh>
#include <devel/init.hh>
#include <core/types.hh>
#include <core/chemical/ChemicalManager.hh>
#include <basic/options/option.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/pack/dunbrack/RotamerConstraint.hh>
#include <basic/Tracer.hh>
#include <protocols/toolbox/match_enzdes_util/EnzConstraintIO.hh>
#include <protocols/jobdist/Jobs.hh>
#include <protocols/jobdist/standard_mains.hh>
#include <protocols/ligand_docking/LigandBaseProtocol.hh>
#include <fstream>
#include <set>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/docking.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/enzdes.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/Pose.hh>
#include <utility/vector1.hh>

Functions
int	main (int argc, char *argv[])

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, begin, basic::options::OptionKeys::enzdes::cstfile, enzdes::cstfile(), in::path::database(), test.T009_Exceptions::e, end, packing::ex1::ex1(), packing::ex1aro::ex1aro(), packing::ex2::ex2(), in::file::extra_res_fa(), packing::extrachi_cutoff(), packing::flip_HNQ(), create_a3b_hbs::i, create_a3b_hbs::ii, basic::init(), basic::options::OptionKeys::in::file::native, docking::native_pose, packing::no_optH(), docking::ligand::old_estat(), OPT, basic::options::option, drrafter_rna::output_tag, out::path::pdb(), pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::run::preserve_header, numeric::random::random_permutation(), beta_sc_scan::restype_set, numeric::random::rg(), in::file::s(), oop_conformations::scorefxn, docking::ligand::soft_rep(), basic::options::OptionKeys::in::file::tags, in::file::tags(), basic::options::TR, packing::unboundrot(), basic::options::OptionKeys::inout::dbms::user, and basic::Warning().