measure_sequence_similarity_to_native.cc File Reference

#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/exit.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/pointer/memory.hh>
#include <protocols/jobdist/standard_mains.hh>
#include <protocols/jobdist/Jobs.hh>
#include <core/select/residue_selector/ResidueSelector.fwd.hh>
#include <core/select/residue_selector/AndResidueSelector.hh>
#include <core/select/residue_selector/ChainSelector.hh>
#include <core/select/residue_selector/InterGroupInterfaceByVectorSelector.hh>
#include <core/select/residue_selector/LayerSelector.hh>
#include <core/select/residue_selector/TrueResidueSelector.hh>
#include <core/import_pose/import_pose.hh>
#include <core/simple_metrics/metrics/SequenceSimilarityMetric.hh>

Functions
ResidueSelectorOP	region_for_string (std::string const &region)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.jackmaguire.MeasureSequenceSimilarityToNative")
static basic::Tracer	TR_results ("apps.pilot.jackmaguire.MeasureSequenceSimilarityToNative.Results")

Detailed Description

Author

Jack Maguire

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, lactamize::filename, basic::init(), bin_torsions::job, surface_app::native, NEW_OPT, option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, test.G102_Functions_General::region, region_for_string(), TR, TR_results, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

region_for_string()

ResidueSelectorOP region_for_string

(

std::string const &

region

)

References local::chain1, local::chain2, interface, test.G102_Functions_General::region, surface, and utility_exit_with_message.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.jackmaguire.MeasureSequenceSimilarityToNative") ( "apps.pilot.jackmaguire.MeasureSequenceSimilarityToNative"  )

static

Referenced by main().

TR_results

basic::Tracer TR_results("apps.pilot.jackmaguire.MeasureSequenceSimilarityToNative.Results") ( "apps.pilot.jackmaguire.MeasureSequenceSimilarityToNative.Results"  )

static

Referenced by main().