check quality of fragments against input structure More...

#include <protocols/moves/Mover.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/types.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/NoOutputJobOutputter.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <protocols/jd2/SilentFileJobInputter.hh>
#include <protocols/toolbox/DecoySetEvaluation.hh>
#include <protocols/toolbox/DecoySetEvaluation.impl.hh>
#include <protocols/toolbox/InteratomicVarianceMatrix.hh>
#include <protocols/toolbox/superimpose.hh>
#include <protocols/toolbox/Cluster.hh>
#include <protocols/toolbox/Cluster.impl.hh>
#include <protocols/loops/Loops.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/id/AtomID.hh>
#include <core/chemical/ChemicalManager.hh>
#include <basic/options/option_macros.hh>
#include <utility/io/ozstream.hh>
#include <utility/vector1.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/cluster.OptionKeys.gen.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <vector>
#include <ostream>
#include <algorithm>
#include <string>
#include <iomanip>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/Jump.hh>
#include <utility/excn/Exceptions.hh>

Functions
void	register_options ()

core::io::silent::SilentStructOP	extract_replica (std::string filename, std::string jobname, core::Real temp_level)

core::io::silent::SilentStructOP	extract_replica (std::string filename, std::string jobname, int replica_id)

int	main (int argc, char *argv[])
	=============================== MAIN ============================================================ More...

Variables
static basic::Tracer	tr ("main")

Detailed Description

check quality of fragments against input structure

Author: Oliver Lange

Function Documentation

◆ extract_replica() [1/2]

core::io::silent::SilentStructOP extract_replica	(	std::string	filename,
		std::string	jobname,
		core::Real	temp_level
	)

References utility::io::oc::cout, oop_conformations::energy, lactamize::filename, subloop_histogram::iterator, sfd, and basic::options::OptionKeys::in::file::silent.

Referenced by main().

◆ extract_replica() [2/2]

core::io::silent::SilentStructOP extract_replica	(	std::string	filename,
		std::string	jobname,
		int	replica_id
	)

References utility::io::oc::cout, lactamize::filename, subloop_histogram::iterator, basic::options::OptionKeys::lh::jobname, make_symmdef_file_denovo::pos, sfd, basic::options::OptionKeys::in::file::silent, and tag.

◆ main()

int main	(	int	argc,
		char *	argv[]
	)

=============================== MAIN ============================================================

References argv, utility::io::oc::cout, test.T009_Exceptions::e, extract_replica(), basic::init(), challenge::ss, tr, and basic::Tracer::Trace.

◆ register_options()

void register_options ( )

References NEW_OPT, OPT, out::file::residue_type_set(), reslist, and in::file::silent().

Variable Documentation

◆ tr

basic::Tracer tr("main") ( "main" )

static